Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 136 8e-27
>seq3106
Length=22756556
Score = 136 bits (150), Expect = 8e-27
Identities = 296/439 (67%), Gaps = 7/439 (2%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| ||||||||||| || ||||| ||||| ||| |||| | || || || || ||||||
Sbjct 217121 GTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGG 217180
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| |||| | |||| || ||||||| |||||||| |||| || ||
Sbjct 217181 CTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGAT 217240
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096
|| || || || | ||||| || ||| || |||| || | || || ||| ||
Sbjct 217241 GAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAA----GCACCTGATGCATAGACC 217296
Query 102097 ATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155
|| |||| | ||| | || ||| || | |||||| |||| || || || || |
Sbjct 217297 CTC-AGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCC 217355
Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215
|||| | || |||| || || | | || ||||||||| || | |||| |||||||
Sbjct 217356 TCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACA 217415
Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275
| || || ||||| || | || || | || |||| | | ||| | | | ||
Sbjct 217416 TCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGGTTTTTCAAGTGG 217475
Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335
|| || || |||||||| |||||||| || || ||||| ||||| ||||| |
Sbjct 217476 AAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGA 217535
Query 102336 AGAGAGTCGCCGAGTATCA 102354
|||| || | |||||||||
Sbjct 217536 AGAGGGTAGGCGAGTATCA 217554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989544137082520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |