Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3106 136 8e-27 >seq3106 Length=22756556 Score = 136 bits (150), Expect = 8e-27 Identities = 296/439 (67%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||||| || ||||| ||||| ||| |||| | || || || || |||||| Sbjct 217121 GTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGG 217180 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| |||| | |||| || ||||||| |||||||| |||| || || Sbjct 217181 CTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGAT 217240 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096 || || || || | ||||| || ||| || |||| || | || || ||| || Sbjct 217241 GAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAA----GCACCTGATGCATAGACC 217296 Query 102097 ATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 || |||| | ||| | || ||| || | |||||| |||| || || || || | Sbjct 217297 CTC-AGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCC 217355 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 |||| | || |||| || || | | || ||||||||| || | |||| ||||||| Sbjct 217356 TCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACA 217415 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 | || || ||||| || | || || | || |||| | | ||| | | | || Sbjct 217416 TCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGGTTTTTCAAGTGG 217475 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 || || || |||||||| |||||||| || || ||||| ||||| ||||| | Sbjct 217476 AAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGA 217535 Query 102336 AGAGAGTCGCCGAGTATCA 102354 |||| || | ||||||||| Sbjct 217536 AGAGGGTAGGCGAGTATCA 217554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989544137082520