Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3106 370 1e-97 seq3040 132 6e-26 seq3018 114 2e-20 seq3134 107 2e-18 seq3140 95.1 2e-14 >seq3106 Length=22756556 Score = 370 bits (410), Expect = 1e-97 Identities = 617/890 (69%), Gaps = 6/890 (1%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 |||||||||||||| | || || || || || | || || || || || || || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 || | || ||||| |||||||| ||||| ||||| || | ||| || ||| Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||| || || | || || || ||||| || || || ||||| | || || Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || || || || ||||| | ||| | || || || || || || || || Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 || || ||||| | || | | || ||| ||| | | || || ||| Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || ||||| || |||||||| ||||| ||||| || || | ||| || ||||| Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| |||||||| || || || || || ||||| || || || || || || || ||| Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33752 || ||||| ||||| || ||||||||||| | | | || |||||| || | || Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || ||||| ||||| || | |||| || ||||| ||||| || || ||| Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCGATG 217036 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 ||||| ||||| | | |||| | |||||| | |||||||||||| | ||||| Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| |||||||||||||| ||||| ||||| || ||||||||||| | |||||| Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || || || |||||| | || || || | ||||| ||||| ||||| ||||| ||| Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 34052 || ||||| || |||| || ||| |||||| ||| | || || || | || | | Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | || ||||| || | |||||| || || | |||||||| || ||||| || Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || |||||||| | ||| |||||||| |||| ||| ||||| || ||||| Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 132 bits (146), Expect = 6e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832 Query 62507 ACTATTTCTAAGACCGTA 62524 ||| ||||| | ||| || Sbjct 3956831 ACTGTTTCTTACACCATA 3956814 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || ||||| || | | Sbjct 3941771 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 3941712 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||||||||| || | ||| || ||| | | || || ||||||| Sbjct 3941711 CTGCTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 3941652 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 3941651 AGGCTCCAGGTAAATAGC 3941634 >seq3018 Length=3443724 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | |||||||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || ||||||||||| | |||||| || || || |||||| Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| |||||||| || || || || | Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||||| Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899 Query 33724 C 33724 | Sbjct 3376900 C 3376900 >seq3134 Length=59225736 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| ||| || | |||||||| | ||||| ||||| |||||| Sbjct 32401668 GTTACCTTCTATGATGTATATATTATTCTGCAAGCTTTTGTATTGACCACTGCTGTGTTT 32401727 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||| ||||||||| ||| | |||| Sbjct 32401728 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGACTTCAGTAAATTTGGAGCAGG 32401786 >seq3140 Length=75551126 Score = 95.1 bits (104), Expect = 2e-14 Identities = 318/492 (65%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 62081 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62140 || ||| ||||| || || || | ||| || ||| || || |||||||| | || Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126 Query 62141 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62200 ||| ||| | | || |||||||| |||| ||| || |||||||| ||||| | Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186 Query 62201 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 || || || || |||| || | | || | || | |||||||| | | ||||| Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246 Query 62261 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATGGATCCACCATCTACCAT 62317 || |||| | ||| || |||| | | ||| |||| | || ||| || | || Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306 Query 62318 AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 62377 |||| ||| || || || ||||||||||| || ||| || | | | | | || Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365 Query 62378 CGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCC---GAGTGTAAATATTACTGGT 62434 || || || || || ||||||| ||||| ||||| | ||||||| || || ||||| Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425 Query 62435 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62494 | | ||||| ||||| |||| | ||||| | ||| ||||| ||||| || Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476 Query 62495 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCA 62554 || | | |||| | |||| | || || || || || || || | | ||| ||| Sbjct 7457477 GGCAATAAGTAAATTGCTTCTTATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCA 7457536 Query 62555 ATTCCAAAGATC 62566 | ||| || || Sbjct 7457537 GTCCCACAGGTC 7457548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792848168320