Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 208 7e-49
seq3140 118 1e-21
seq3040 109 5e-19
seq3018 102 8e-17
>seq3106
Length=22756556
Score = 208 bits (230), Expect = 7e-49
Identities = 582/887 (66%), Gaps = 12/887 (1%)
Strand=Plus/Minus
Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388
|| |||||| | ||||| || | || | || | || || || || ||||| ||||||||
Sbjct 217566 ACTCCCATCCTCTGATACTCGCCTACCC-TCTTCTCAAAGAAGTTTGTCTTCCCTTCTAG 217508
Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448
|| |||| |||||| ||| ||| ||||| | || | || || || || | || |
Sbjct 217507 AGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAG 217448
Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508
|||| | | || || || ||||| || || ||||| ||| | || |||||
Sbjct 217447 CTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCAT 217388
Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568
|| || || | ||| || | || | || | ||||||| || || | || || |
Sbjct 217387 GCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTT 217328
Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628
| ||| ||| | | | | || || ||| ||| | | || || ||||| |
Sbjct 217327 GACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAG 217268
Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688
|| || || ||||| || | || || ||||| || || |||||||| ||||| || |
Sbjct 217267 GCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAG 217208
Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748
|||||||| | ||| ||||| || | ||| || || | ||||| ||||||||||| ||
Sbjct 217207 GCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAA 217148
Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGA 11805
|| || ||||| || ||||| ||||| || | ||| ||||| ||| |||
Sbjct 217147 GATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCC 217088
Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
||||| |||||| || | ||| || || || ||| || || || || ||
Sbjct 217087 AATCCAGCGCAAGGCCCAGTCCG---ACTTCTTCACACAGGGCATGGTCTCGATGGCATT 217031
Query 11866 AAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923
|| | || | ||| ||| | |||| | | ||| ||||| || | | ||| |||
Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGA--ATCTTTGATATAAGTATCGATGAGGAGACTGTAC 216973
Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983
||||| |||||||| |||||||| || || || || || |||||||| || |||||||
Sbjct 216972 ATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTG 216913
Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043
|| || || || | ||| | ||||||||||| || || ||||| || |
Sbjct 216912 ATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCG 216853
Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103
||||| || || || | ||| |||||||||| | || || | | |||||
Sbjct 216852 GCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAG 216793
Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163
| | | ||||| || | ||| || || || | |||||||| ||| | | ||
Sbjct 216792 TGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTC 216733
Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|||||||| | ||| || ||||| || | |||||||| || || ||
Sbjct 216732 TTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3140
Length=75551126
Score = 118 bits (130), Expect = 1e-21
Identities = 302/456 (66%), Gaps = 18/456 (4%)
Strand=Plus/Plus
Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864
|||||||| | ||| | | | || | ||||||||| ||||| || | |||| ||
Sbjct 7457041 ATAGGATTAGCTGCATGTCTGGACCTTAAATAATACATCCCAGTCTTCAAACCCAGCTTC 7457100
Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924
| || || ||||||||| | || || | || ||| | | |||| || ||
Sbjct 7457101 CCGCCACCAAGGTGCATACTGATAAGCTTGCCATAGATAGACTCAATGATATGGATGTTC 7457160
Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984
| || || |||||||| || || | |||||| || || |||| | | || | ||
Sbjct 7457161 ACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTGAGAACAGTTTCC 7457220
Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA---A 37041
||||| || ||||| ||| | ||||| | || || | || ||| || | |||| |
Sbjct 7457221 TGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGAATTTCTAGTACA 7457280
Query 37042 TGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTT 37101
|| |||| ||||| | | ||| ||| || || || | |||||| | | |
Sbjct 7457281 CTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCATTCCATA-ACCT 7457339
Query 37102 CTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160
| ||| | || | | | || ||| ||| ||||||||||||||| | ||||| || || ||
Sbjct 7457340 C-ACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCTCCTGACAAGAC 7457398
Query 37161 TCTTCTT---GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATAT 37217
||||||| || || || ||||| ||| | |||||| ||||||| |||| |
Sbjct 7457399 TCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTTAT---------T 7457449
Query 37218 TTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253
|||| | || |||||||||||||| || || ||
Sbjct 7457450 CTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAG 7457485
>seq3040
Length=4637412
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185
|||| |||| |||||||| ||||| || || ||||||| || || || || || |||
Sbjct 3956962 TGTGAATTTCTTACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTA 3956903
Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245
|| |||||||||||||||||||| | || || |||| || || ||||||||||||||
Sbjct 3956902 TAAGGTTCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGG 3956843
Query 37246 GCTATTAGAAGGCTATTTCTCAATCCAT 37273
|| || || | || ||||| | ||||
Sbjct 3956842 GCAATAAGTAAACTGTTTCTTACACCAT 3956815
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| ||||| | ||||| | || || | | |||
Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| ||| || ||||||| || | |||||| || | |||||||||||| | |
Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094
Query 38533 ATATGTTGTGGTCTTTC 38549
|||||||| ||||||||
Sbjct 3936093 ATATGTTGCGGTCTTTC 3936077
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/159 (72%), Gaps = 4/159 (3%)
Strand=Plus/Minus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| || || || ||||||||||| || || | || |||| | | | |||| ||
Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACA-- 36980
||| || || |||||||| || || |||||||| || ||||||| ||| | ||||
Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCA--TCTTGAGTACAGT 3960626
Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
||| ||||| || ||||| || || ||||| | ||| ||
Sbjct 3960625 TTTCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTT 3960587
>seq3018
Length=3443724
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| ||||| || | |||||||| | ||| ||||| ||
Sbjct 3376782 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3376841
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| || || | ||||| ||||||||||| || || || |||||||| ||||| |||
Sbjct 3376842 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGGCT 3376901
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||| ||
Sbjct 3376902 ACCACGCGTTCCCC 3376915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468506386975360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |