Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3106 208 7e-49 seq3140 118 1e-21 seq3040 109 5e-19 seq3018 102 8e-17 >seq3106 Length=22756556 Score = 208 bits (230), Expect = 7e-49 Identities = 582/887 (66%), Gaps = 12/887 (1%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388 || |||||| | ||||| || | || | || | || || || || ||||| |||||||| Sbjct 217566 ACTCCCATCCTCTGATACTCGCCTACCC-TCTTCTCAAAGAAGTTTGTCTTCCCTTCTAG 217508 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 || |||| |||||| ||| ||| ||||| | || | || || || || | || | Sbjct 217507 AGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAG 217448 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 |||| | | || || || ||||| || || ||||| ||| | || ||||| Sbjct 217447 CTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCAT 217388 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || | ||| || | || | || | ||||||| || || | || || | Sbjct 217387 GCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTT 217328 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 | ||| ||| | | | | || || ||| ||| | | || || ||||| | Sbjct 217327 GACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAG 217268 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 || || || ||||| || | || || ||||| || || |||||||| ||||| || | Sbjct 217267 GCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAG 217208 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 |||||||| | ||| ||||| || | ||| || || | ||||| ||||||||||| || Sbjct 217207 GCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAA 217148 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGA 11805 || || ||||| || ||||| ||||| || | ||| ||||| ||| ||| Sbjct 217147 GATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCC 217088 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| |||||| || | ||| || || || ||| || || || || || Sbjct 217087 AATCCAGCGCAAGGCCCAGTCCG---ACTTCTTCACACAGGGCATGGTCTCGATGGCATT 217031 Query 11866 AAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || | || | ||| ||| | |||| | | ||| ||||| || | | ||| ||| Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGA--ATCTTTGATATAAGTATCGATGAGGAGACTGTAC 216973 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 ||||| |||||||| |||||||| || || || || || |||||||| || ||||||| Sbjct 216972 ATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTG 216913 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 || || || || | ||| | ||||||||||| || || ||||| || | Sbjct 216912 ATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCG 216853 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 ||||| || || || | ||| |||||||||| | || || | | ||||| Sbjct 216852 GCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAG 216793 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | | | ||||| || | ||| || || || | |||||||| ||| | | || Sbjct 216792 TGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTC 216733 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||||| | ||| || ||||| || | |||||||| || || || Sbjct 216732 TTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3140 Length=75551126 Score = 118 bits (130), Expect = 1e-21 Identities = 302/456 (66%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||||||| | ||| | | | || | ||||||||| ||||| || | |||| || Sbjct 7457041 ATAGGATTAGCTGCATGTCTGGACCTTAAATAATACATCCCAGTCTTCAAACCCAGCTTC 7457100 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 | || || ||||||||| | || || | || ||| | | |||| || || Sbjct 7457101 CCGCCACCAAGGTGCATACTGATAAGCTTGCCATAGATAGACTCAATGATATGGATGTTC 7457160 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | || || |||||||| || || | |||||| || || |||| | | || | || Sbjct 7457161 ACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTGAGAACAGTTTCC 7457220 Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA---A 37041 ||||| || ||||| ||| | ||||| | || || | || ||| || | |||| | Sbjct 7457221 TGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGAATTTCTAGTACA 7457280 Query 37042 TGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTT 37101 || |||| ||||| | | ||| ||| || || || | |||||| | | | Sbjct 7457281 CTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCATTCCATA-ACCT 7457339 Query 37102 CTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160 | ||| | || | | | || ||| ||| ||||||||||||||| | ||||| || || || Sbjct 7457340 C-ACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCTCCTGACAAGAC 7457398 Query 37161 TCTTCTT---GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATAT 37217 ||||||| || || || ||||| ||| | |||||| ||||||| |||| | Sbjct 7457399 TCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTTAT---------T 7457449 Query 37218 TTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 |||| | || |||||||||||||| || || || Sbjct 7457450 CTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAG 7457485 >seq3040 Length=4637412 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 |||| |||| |||||||| ||||| || || ||||||| || || || || || ||| Sbjct 3956962 TGTGAATTTCTTACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTA 3956903 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 || |||||||||||||||||||| | || || |||| || || |||||||||||||| Sbjct 3956902 TAAGGTTCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGG 3956843 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || || | || ||||| | |||| Sbjct 3956842 GCAATAAGTAAACTGTTTCTTACACCAT 3956815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| | || || | | ||| Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| ||| || ||||||| || | |||||| || | |||||||||||| | | Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094 Query 38533 ATATGTTGTGGTCTTTC 38549 |||||||| |||||||| Sbjct 3936093 ATATGTTGCGGTCTTTC 3936077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || ||||||||||| || || | || |||| | | | |||| || Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACA-- 36980 ||| || || |||||||| || || |||||||| || ||||||| ||| | |||| Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCA--TCTTGAGTACAGT 3960626 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||| ||||| || ||||| || || ||||| | ||| || Sbjct 3960625 TTTCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTT 3960587 >seq3018 Length=3443724 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | |||||||| | ||| ||||| || Sbjct 3376782 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3376841 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| ||||||||||| || || || |||||||| ||||| ||| Sbjct 3376842 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGGCT 3376901 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 3376902 ACCACGCGTTCCCC 3376915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506386975360