Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3129 132 4e-26 >seq3129 Length=43247874 Score = 132 bits (146), Expect = 4e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||||||| || |||| || || || |||||||||||||| ||||| || || Sbjct 41738266 CAGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGG 41738207 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || ||||||||||| | || | |||||||||||| ||||||| ||||| | Sbjct 41738206 CACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCAC 41738147 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||| ||||| || | |||||| ||||| || |||||| Sbjct 41738146 CACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCATC 41738104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427759608693120