Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3063 102 8e-17
seq3082 95.1 1e-14
seq2997 91.5 1e-13
seq3105 82.4 8e-11
seq3061 82.4 8e-11
>seq3063
Length=7952490
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| |||||||||| ||||| || |||| || | ||||| || || |||||
Sbjct 5877699 GTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCA-TCTTCCAGTTGCTTACC 5877641
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
| || ||||||| | ||||||||| ||||| || ||||| || || ||| || ||
Sbjct 5877640 AACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 5877581
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
|| | ||| | |||| || |||||| |||| | ||| | ||| | || || | ||
Sbjct 5877580 TACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTAAGGGT 5877521
Query 139747 TTTTACGAATATTTGCAT 139764
||||||||| || |||||
Sbjct 5877520 TTTTACGAAAATCTGCAT 5877503
>seq3082
Length=10725151
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| || || | ||||
Sbjct 1251223 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA 1251164
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| || || || |||||||| ||
Sbjct 1251163 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTA 1251104
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | |||||| ||||||||||||| | ||| |
Sbjct 1251103 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATG 1251044
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| ||||| ||||| ||||||||
Sbjct 1251043 GTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 1251009
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| || || | ||||
Sbjct 1251451 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA 1251392
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| || ||||| |||||||||||
Sbjct 1251391 TCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 1251332
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | |||||| ||||||||||||| | || |
Sbjct 1251331 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 1251272
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || || ||||| || |||||
Sbjct 1251271 GTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||||||||| || ||||| || || | |||| ||||| ||||| || ||
Sbjct 1251661 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 1251602
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| ||||||||||| || ||| || ||
Sbjct 1251601 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 1251542
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| |||||||||| || | ||| | |||||||| |||| ||
Sbjct 1251541 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 1251482
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 1251481 TTCACGAAGATCTGCAT 1251465
>seq2997
Length=2481227
Score = 91.5 bits (100), Expect = 1e-13
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630
|||| ||||||||||| ||| | || || | || | ||||| || || |||||||||
Sbjct 411678 ACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTGCTTACCAGCA 411619
Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690
||||||| | ||||||||| ||||| || ||||| || || ||| || ||||
Sbjct 411618 AAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 411559
Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750
| ||| || ||||| | ||| || ||||| | ||| ||||| || | | ||||||
Sbjct 411558 TTTTCTACAGTGTCCGAGGGTTCAACCTCGA-GGTGGTGGTCTTCCCCATAACGGTTTTT 411500
Query 139751 ACGAATATTTGCAT 139764
| ||| || || ||
Sbjct 411499 ATGAAAATCTGTAT 411486
>seq3105
Length=21505965
Score = 82.4 bits (90), Expect = 8e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || ||||| ||||||||||| ||||| || || | || | ||||| || ||
Sbjct 7417360 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA-TCTTCCAGTTG 7417418
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
| || ||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 7417419 TGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 7417478
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | ||||| ||| || ||| | | | ||||| || ||
Sbjct 7417479 GGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGT 7417538
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| |||||||| || || ||||
Sbjct 7417539 AAAGGTTTTTACAAAAATCGGCAT 7417562
>seq3061
Length=7642621
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/204 (70%), Gaps = 7/204 (3%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || | ||| ||||||||||| ||||| || |||| || | ||||| ||
Sbjct 2174620 TGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCA-TCTTCCAG--- 2174565
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||||||||| ||||||| | ||| ||||| ||||| || ||||| || || ||| ||
Sbjct 2174564 -TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2174506
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| || ||||| | || || ||| | ||| | ||||| || ||
Sbjct 2174505 GGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTGT 2174446
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| | ||||| ||| || |||||
Sbjct 2174445 -AAGGGTTTTATGAAAATCTGCAT 2174423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496044504684800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |