Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3063 102 8e-17 seq3082 95.1 1e-14 seq2997 91.5 1e-13 seq3105 82.4 8e-11 seq3061 82.4 8e-11 >seq3063 Length=7952490 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| |||||||||| ||||| || |||| || | ||||| || || ||||| Sbjct 5877699 GTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCA-TCTTCCAGTTGCTTACC 5877641 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 | || ||||||| | ||||||||| ||||| || ||||| || || ||| || || Sbjct 5877640 AACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 5877581 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | |||| || |||||| |||| | ||| | ||| | || || | || Sbjct 5877580 TACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTAAGGGT 5877521 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||| || ||||| Sbjct 5877520 TTTTACGAAAATCTGCAT 5877503 >seq3082 Length=10725151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 1251223 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA 1251164 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || |||||||| || Sbjct 1251163 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTA 1251104 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| ||||||||||||| | ||| | Sbjct 1251103 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATG 1251044 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| ||||| ||||| |||||||| Sbjct 1251043 GTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 1251009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 1251451 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA 1251392 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || ||||| ||||||||||| Sbjct 1251391 TCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 1251332 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| ||||||||||||| | || | Sbjct 1251331 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 1251272 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 1251271 GTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 1251661 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 1251602 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||||||||| || ||| || || Sbjct 1251601 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 1251542 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | |||||||| |||| || Sbjct 1251541 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 1251482 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1251481 TTCACGAAGATCTGCAT 1251465 >seq2997 Length=2481227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630 |||| ||||||||||| ||| | || || | || | ||||| || || ||||||||| Sbjct 411678 ACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTGCTTACCAGCA 411619 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 ||||||| | ||||||||| ||||| || ||||| || || ||| || |||| Sbjct 411618 AAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 411559 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| || ||||| | ||| || ||||| | ||| ||||| || | | |||||| Sbjct 411558 TTTTCTACAGTGTCCGAGGGTTCAACCTCGA-GGTGGTGGTCTTCCCCATAACGGTTTTT 411500 Query 139751 ACGAATATTTGCAT 139764 | ||| || || || Sbjct 411499 ATGAAAATCTGTAT 411486 >seq3105 Length=21505965 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| ||||| || || | || | ||||| || || Sbjct 7417360 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA-TCTTCCAGTTG 7417418 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 | || ||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 7417419 TGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 7417478 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||||| ||| || ||| | | | ||||| || || Sbjct 7417479 GGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGT 7417538 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || |||||||| || || |||| Sbjct 7417539 AAAGGTTTTTACAAAAATCGGCAT 7417562 >seq3061 Length=7642621 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || | ||| ||||||||||| ||||| || |||| || | ||||| || Sbjct 2174620 TGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCA-TCTTCCAG--- 2174565 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| ||||||| | ||| ||||| ||||| || ||||| || || ||| || Sbjct 2174564 -TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2174506 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| || ||||| | || || ||| | ||| | ||||| || || Sbjct 2174505 GGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTGT 2174446 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || | ||||| ||| || ||||| Sbjct 2174445 -AAGGGTTTTATGAAAATCTGCAT 2174423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044504684800