Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3106 385 7e-102 seq3040 127 3e-24 seq3140 125 1e-23 seq3018 114 2e-20 >seq3106 Length=22756556 Score = 385 bits (426), Expect = 7e-102 Identities = 620/890 (70%), Gaps = 6/890 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 |||||||||||||| | || || || || || | || || || || || || || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || | || ||||| |||||||| ||||| ||||| || | | ||| || ||| Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | || || || || || || || || ||||| | || || Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || ||||| | ||| | || || || || || || || || Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 || | ||||| | || | | || ||| ||||| | || || ||| Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||| || |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 ||||| |||||||| || || || || || ||||| || || |||||||| || |||||| Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130 || ||||| ||||| || || |||||||| || | | || |||||| |||| || Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || ||||| ||||| || | |||||| ||||| ||||| || || ||| Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATG 217036 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| ||||| | | |||| | |||||| | |||||||||||| | ||||| Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| |||||||||||||| ||||| ||||| || ||||||||||| | |||||| Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || || || |||||| | || || || | ||||| ||||| ||||| || || ||| Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || |||| || ||| |||||| | | | || | ||| | || | | Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | | || ||||| || | ||| || || || | |||||||| || ||||| || Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || |||||||| | ||| |||||||| |||| ||| ||||| || ||||| Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || |||||||| ||||| || ||||||||||| || || ||||| || || | | ||| Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| ||||| | ||| || Sbjct 3956831 ACTGTTTCTTACACCATA 3956814 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 3941647 TCCAGGTAAATAGC 3941634 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 3931312 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCCGCCAAAA 3931253 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 3931252 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 3931193 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 3931192 GTTCCACTGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 3931147 >seq3140 Length=75551126 Score = 125 bits (138), Expect = 1e-23 Identities = 415/633 (66%), Gaps = 23/633 (4%) Strand=Plus/Plus Query 78835 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 78894 |||||||| |||| ||| || |||||||| ||||| | || || || || |||| || Sbjct 7457149 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTG 7457208 Query 78895 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 78954 | | || | || | |||||||| | | ||||||| |||| | ||| || ||| Sbjct 7457209 AGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGA 7457268 Query 78955 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | | | ||| |||| | || ||| |||| |||||| ||| || || |||||| Sbjct 7457269 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7457328 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 |||||||| || ||| || | | | | | || ||||| || || ||| ||||| Sbjct 7457329 TTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7457387 Query 79072 CCAGACAATACTCTCC---GAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTA 79128 || ||||| ||||| | ||||||| || || |||||| | ||||| || || ||| Sbjct 7457388 CCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTTA 7457447 Query 79129 TTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTA 79188 | | ||||| | ||| || || ||||| || || | | |||| | |||| Sbjct 7457448 T---------TCTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAGTAAATTGCTTCTT 7457498 Query 79189 AGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGA-C 79247 | || || | || || || || | | || ||| ||||| || || || ||| Sbjct 7457499 ATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCAGTCCCACAGGTC-TACAGGAGT 7457557 Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTAC-TAGCGTATGATCCTGTGTATGTTT 79306 ||||||||| | ||||| || || || || || | || | | || | | || |||| Sbjct 7457558 AACATTCCACACATCATCATGAAGGATTCCTTTGCTTATTGGA-GAGCTTTCATAGGTTT 7457616 Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 |||| || | || || | |||||| |||| | || || | |||| || ||| | | Sbjct 7457617 CATATGGGCTTTGCTCCTTGGCTAAATCAC-ATGGGCTTCCAGGACTCCATAGTAAGTAG 7457675 Query 79367 TTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG 79425 | | || || | |||||| || | | | || ||| | || ||||| ||||| | | Sbjct 7457676 TCCCAAAGATTTGCTTATTTAGTAACCAG-GCCTCTGGACTCTCAAAAGGATATCTCATC 7457734 Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCA 79458 || ||||| || ||||| | | ||| || ||| Sbjct 7457735 AGGATAAAAGCATCTGCCAGGCTTTGTACCCCA 7457767 >seq3018 Length=3443724 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | |||||||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || ||||||||||| | |||||| || || || |||||| Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240572036160