Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 385 7e-102
seq3040 127 3e-24
seq3140 125 1e-23
seq3018 114 2e-20
>seq3106
Length=22756556
Score = 385 bits (426), Expect = 7e-102
Identities = 620/890 (70%), Gaps = 6/890 (1%)
Strand=Plus/Minus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
|||||||||||||| | || || || || || | || || || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|| | || ||||| |||||||| ||||| ||||| || | | ||| || |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | || || || || || || || || ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || ||||| | ||| | || || || || || || || ||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|| | ||||| | || | | || ||| ||||| | || || |||
Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| || ||||| || |||||||| ||||| ||||| || || ||||| ||||||||
Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| |||||||| || || || || || ||||| || || |||||||| || ||||||
Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130
|| ||||| ||||| || || |||||||| || | | || |||||| |||| ||
Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093
Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
|| ||||| ||||| || | |||||| ||||| ||||| || || |||
Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATG 217036
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
||||| ||||| | | |||| | |||||| | |||||||||||| | |||||
Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
|||||||| |||||||||||||| ||||| ||||| || ||||||||||| | ||||||
Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
|| || || |||||| | || || || | ||||| ||||| ||||| || || |||
Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430
|| ||||| || |||| || ||| |||||| | | | || | ||| | || | |
Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|| | | || ||||| || | ||| || || || | |||||||| || ||||| ||
Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|| |||||||| | ||| |||||||| |||| ||| ||||| || |||||
Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 127 bits (140), Expect = 3e-24
Identities = 111/138 (80%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178
|| |||||||| ||||| || ||||||||||| || || ||||| || || | | |||
Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832
Query 79179 ACTATTTCTAAGACCGTA 79196
||| ||||| | ||| ||
Sbjct 3956831 ACTGTTTCTTACACCATA 3956814
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || ||||| |||| | |||
Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||||||||| || | ||| || ||| | | || || ||||||| ||
Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 3941647 TCCAGGTAAATAGC 3941634
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| || | ||| |||||||| ||||| | || || || || || || || || ||||
Sbjct 3931312 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCCGCCAAAA 3931253
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
||||||| || || || | ||||| | || || ||| |||| || |||| ||| ||||
Sbjct 3931252 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 3931193
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843
||| || || || || ||| | |||| || ||||| || |||||
Sbjct 3931192 GTTCCACTGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 3931147
>seq3140
Length=75551126
Score = 125 bits (138), Expect = 1e-23
Identities = 415/633 (66%), Gaps = 23/633 (4%)
Strand=Plus/Plus
Query 78835 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 78894
|||||||| |||| ||| || |||||||| ||||| | || || || || |||| ||
Sbjct 7457149 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTG 7457208
Query 78895 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 78954
| | || | || | |||||||| | | ||||||| |||| | ||| || |||
Sbjct 7457209 AGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGA 7457268
Query 78955 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011
| | | ||| |||| | || ||| |||| |||||| ||| || || ||||||
Sbjct 7457269 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7457328
Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071
|||||||| || ||| || | | | | | || ||||| || || ||| |||||
Sbjct 7457329 TTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7457387
Query 79072 CCAGACAATACTCTCC---GAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTA 79128
|| ||||| ||||| | ||||||| || || |||||| | ||||| || || |||
Sbjct 7457388 CCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTTA 7457447
Query 79129 TTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTA 79188
| | ||||| | ||| || || ||||| || || | | |||| | ||||
Sbjct 7457448 T---------TCTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAGTAAATTGCTTCTT 7457498
Query 79189 AGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGA-C 79247
| || || | || || || || | | || ||| ||||| || || || |||
Sbjct 7457499 ATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCAGTCCCACAGGTC-TACAGGAGT 7457557
Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTAC-TAGCGTATGATCCTGTGTATGTTT 79306
||||||||| | ||||| || || || || || | || | | || | | || ||||
Sbjct 7457558 AACATTCCACACATCATCATGAAGGATTCCTTTGCTTATTGGA-GAGCTTTCATAGGTTT 7457616
Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366
|||| || | || || | |||||| |||| | || || | |||| || ||| | |
Sbjct 7457617 CATATGGGCTTTGCTCCTTGGCTAAATCAC-ATGGGCTTCCAGGACTCCATAGTAAGTAG 7457675
Query 79367 TTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG 79425
| | || || | |||||| || | | | || ||| | || ||||| ||||| | |
Sbjct 7457676 TCCCAAAGATTTGCTTATTTAGTAACCAG-GCCTCTGGACTCTCAAAAGGATATCTCATC 7457734
Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCA 79458
|| ||||| || ||||| | | ||| || |||
Sbjct 7457735 AGGATAAAAGCATCTGCCAGGCTTTGTACCCCA 7457767
>seq3018
Length=3443724
Score = 114 bits (126), Expect = 2e-20
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||| | |||||||||||| | ||||| |||||||| |||||||||||||| |||||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
||||| || ||||||||||| | |||||| || || || ||||||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718240572036160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |