Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3106 212 6e-50 seq3018 93.3 4e-14 >seq3106 Length=22756556 Score = 212 bits (234), Expect = 6e-50 Identities = 614/937 (66%), Gaps = 11/937 (1%) Strand=Plus/Minus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||| ||| |||| |||| ||| ||| || | | || ||||| ||||| | Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | || || || ||||||||||| || || ||||| || || ||||| || Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496 Query 13643 CATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAATAGTA 13701 ||| || |||||||||||| | || | ||| || || || | || || |||| | | Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 || ||||| | ||||| || || || ||| | || || ||||| || || || | Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | || || | | || | || || | || || || || | ||||| Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881 | | ||| | || || || | || || || || || | || || || | Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 |||| || |||||||||||||| || || ||||| || ||||| || | || ||||| | Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 ||| ||||| || | ||| || || | ||||| || || ||||| || || || || | Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 | |||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 ||||| || || || || | | | ||| || || || ||||| || | | | Sbjct 217076 AGGCCCAGTCCGA---CTTCTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020 Query 14122 CC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 || |||||| | | ||| || || ||||| || || | || ||||||||||| || Sbjct 217019 CCCTTTCTCTGGAATCTTTG--ATATAAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||||||| || ||||| || || || || || | ||| || | ||| ||||| Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | || | || ||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAAT 14358 || | || | ||||||||| ||| || || || || ||| | | || | | Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGA-ATGT 216783 Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14418 | || |||||||| || || || | |||||||| || | ||||| |||||||| Sbjct 216782 CTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCT 216723 Query 14419 CCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| || || | ||| ||||| || | ||||| Sbjct 216722 GCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3018 Length=3443724 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||| ||| |||| |||| |||| ||| || | | || ||||| ||||| | Sbjct 3375797 CTAAAAGTCAGCATCCAATGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 3375856 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | || || || ||||||||||| || || |||||||| || ||||| || Sbjct 3375857 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTCTC 3375916 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || |||||||||||| Sbjct 3375917 CATGAAGTCAAATGGATTT 3375935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709146689600