Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 212 6e-50
seq3018 93.3 4e-14
>seq3106
Length=22756556
Score = 212 bits (234), Expect = 6e-50
Identities = 614/937 (66%), Gaps = 11/937 (1%)
Strand=Plus/Minus
Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582
|||||| ||| |||| |||| ||| ||| || | | || ||||| ||||| |
Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | || || || ||||||||||| || || ||||| || || ||||| ||
Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496
Query 13643 CATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAATAGTA 13701
||| || |||||||||||| | || | ||| || || || | || || |||| | |
Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437
Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761
|| ||||| | ||||| || || || ||| | || || ||||| || || || |
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821
| || || | | || | || || | || || || || | |||||
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317
Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881
| | ||| | || || || | || || || || || | || || || |
Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257
Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941
|||| || |||||||||||||| || || ||||| || ||||| || | || ||||| |
Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197
Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001
||| ||||| || | ||| || || | ||||| || || ||||| || || || || |
Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137
Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061
| |||||||| |||| | ||||| ||| | | || | ||||| | |||||
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077
Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121
||||| || || || || | | | ||| || || || ||||| || | | |
Sbjct 217076 AGGCCCAGTCCGA---CTTCTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020
Query 14122 CC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179
|| |||||| | | ||| || || ||||| || || | || ||||||||||| ||
Sbjct 217019 CCCTTTCTCTGGAATCTTTG--ATATAAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962
Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239
||||||||||| || ||||| || || || || || | ||| || | ||| |||||
Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902
Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299
| || | || ||||||| ||||| ||||| ||||| || || ||||| || ||
Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842
Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAAT 14358
|| | || | ||||||||| ||| || || || || ||| | | || | |
Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGA-ATGT 216783
Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14418
| || |||||||| || || || | |||||||| || | ||||| ||||||||
Sbjct 216782 CTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCT 216723
Query 14419 CCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455
||| || || | ||| ||||| || | |||||
Sbjct 216722 GCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3018
Length=3443724
Score = 93.3 bits (102), Expect = 4e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582
|||||| ||| |||| |||| |||| ||| || | | || ||||| ||||| |
Sbjct 3375797 CTAAAAGTCAGCATCCAATGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 3375856
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | || || || ||||||||||| || || |||||||| || ||||| ||
Sbjct 3375857 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTCTC 3375916
Query 13643 CATAAAATCAAATGGATTT 13661
||| || ||||||||||||
Sbjct 3375917 CATGAAGTCAAATGGATTT 3375935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479709146689600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |