Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3106 203 3e-47 >seq3106 Length=22756556 Score = 203 bits (224), Expect = 3e-47 Identities = 612/938 (65%), Gaps = 13/938 (1%) Strand=Plus/Minus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 |||||| ||| |||| |||| ||| ||| || | | || ||||| ||||| | Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | || || || ||||| ||||| || || ||||| || || ||||| || Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496 Query 13431 CATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAATA 13489 ||| || || ||||||||| | || | ||| || || || | || || |||| | | Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 || ||||| | ||||| || || || ||| | || || ||||| || || || | Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 | || || | | || | || || | || || || || | | ||||| Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||| | | | | || || || | || || || || || | || || || | Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || |||||||||||||| || || ||||| || ||||| || | || ||||| | Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||| ||||| || | ||| || || | || || || || ||||| || || || || | Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | |||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || || || || | | | ||| || ||||| |||||||| | | Sbjct 217076 AGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020 Query 13910 CC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || |||||| | | |||| || | ||||| || || | || ||||||||||| || Sbjct 217019 CCCTTTCTCTGGAATCTTTGATAT--AAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 |||||||| || || ||||| || || || ||||| | ||| |||| ||| || || Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | || | || |||| || ||||| || || ||||| || || ||||| || || Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145 || | || | ||||||||| ||| || || || || ||| | ||| || Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT--GCTGAATG 216784 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 || || |||||||| || || || | |||||||| || | ||||| |||||||| Sbjct 216783 TCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATC 216724 Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| || || | ||| ||||| || | ||||| Sbjct 216723 TGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569991460160