Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 203 3e-47
>seq3106
Length=22756556
Score = 203 bits (224), Expect = 3e-47
Identities = 612/938 (65%), Gaps = 13/938 (1%)
Strand=Plus/Minus
Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370
|||||| ||| |||| |||| ||| ||| || | | || ||||| ||||| |
Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | || || || ||||| ||||| || || ||||| || || ||||| ||
Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496
Query 13431 CATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAATA 13489
||| || || ||||||||| | || | ||| || || || | || || |||| | |
Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437
Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549
|| ||||| | ||||| || || || ||| | || || ||||| || || || |
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609
| || || | | || | || || | || || || || | | |||||
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317
Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669
||| | | | | || || || | || || || || || | || || || |
Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257
Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729
|||| || |||||||||||||| || || ||||| || ||||| || | || ||||| |
Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197
Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789
||| ||||| || | ||| || || | || || || || ||||| || || || || |
Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137
Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849
| |||||||| |||| | ||||| ||| | | || | ||||| |||||
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077
Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909
||||| || || || || | | | ||| || ||||| |||||||| | |
Sbjct 217076 AGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020
Query 13910 CC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967
|| |||||| | | |||| || | ||||| || || | || ||||||||||| ||
Sbjct 217019 CCCTTTCTCTGGAATCTTTGATAT--AAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962
Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027
|||||||| || || ||||| || || || ||||| | ||| |||| ||| || ||
Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902
Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087
| || | || |||| || ||||| || || ||||| || || ||||| || ||
Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842
Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145
|| | || | ||||||||| ||| || || || || ||| | ||| ||
Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT--GCTGAATG 216784
Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205
|| || |||||||| || || || | |||||||| || | ||||| ||||||||
Sbjct 216783 TCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATC 216724
Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||| || || | ||| ||||| || | |||||
Sbjct 216723 TGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478569991460160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |