Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3106 365 6e-96 seq3040 134 2e-26 seq3140 123 3e-23 seq3018 102 1e-16 >seq3106 Length=22756556 Score = 365 bits (404), Expect = 6e-96 Identities = 618/892 (69%), Gaps = 10/892 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 |||||||||||||| | || || || || || | || || || || || ||||| ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 || | || ||||| |||||||| ||||| ||||| || | | ||| || ||| Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 |||| || || | || || || | ||| || || || ||||| | || || Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || || || ||||| | ||| | || || || || || || || ||| Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAA 42056 |||| ||||| || | | ||| | || ||| || || | || || | Sbjct 217332 GCGTTGACGATAATC--TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA 217275 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| || ||||| || |||||||| ||||||||||| || || | ||| ||||||| Sbjct 217274 ACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAA 217215 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | ||||| |||||||| || || || || || ||||| || || |||||||| || |||| Sbjct 217214 AGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAG 217155 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CAC 42233 |||| ||||| ||||| || || |||||||| | | | || |||||| || | Sbjct 217154 AAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTT 217095 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| ||||| ||||| || | |||| || ||||| ||||| || || | Sbjct 217094 TGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCGA 217038 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 ||||||| ||||| | | |||| | |||||| | ||| |||||||| | |||| Sbjct 217037 TGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGAC 216978 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | |||||||| |||||||||||||| ||||| ||||| || ||||||||||| | |||| Sbjct 216977 TGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCT 216918 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | || | || |||||| | || || || | ||||| || || ||||| || || | Sbjct 216917 CTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGC 216858 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 |||| ||||| || |||| || ||| |||||| ||| | || || || | | | Sbjct 216857 TGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTT 216798 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | || ||||| || | ||| || || ||| |||||||||| || || || | Sbjct 216797 CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGG 216738 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | || |||||||| | ||| || ||||| |||| || ||||| || ||||| Sbjct 216737 CTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | || Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832 Query 71262 ACTATTTCTAAGACCAT 71278 ||| ||||| | ||||| Sbjct 3956831 ACTGTTTCTTACACCAT 3956815 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 3941647 TCCAGGTAAATAGC 3941634 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| |||| || || || || || | | | |||||| ||||| || || || | Sbjct 3951802 GAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGG 3951743 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| || || || || | |||||| || || ||||| || || ||| Sbjct 3951742 GCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTGGGCTTCTGGACTCTCA 3951683 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || ||||| | ||||| || ||||| || || || Sbjct 3951682 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTACACCAATTCCAATGGGG 3951623 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 3951622 CGATGACGTTTATTTGA 3951606 >seq3140 Length=75551126 Score = 123 bits (136), Expect = 3e-23 Identities = 283/423 (67%), Gaps = 16/423 (4%) Strand=Plus/Plus Query 70836 TAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 70895 || ||| ||||| || || || | ||| || ||| || || |||||||| | || Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126 Query 70896 TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGC 70955 ||| |||| ||| || || || || |||| ||||| |||||||| ||||| | Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186 Query 70956 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 || || || || |||| || | | || | || | |||||||| | | ||||| Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246 Query 71016 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATGGATCCACCATCTGCAAT 71072 || |||| | ||| || |||| | | ||| |||| | || ||| ||||||| Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306 Query 71073 AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 71132 |||| |||||| || |||||||||||||| || ||| || | | | | | || Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365 Query 71133 AGGATTAACTACTTGAAATTCTCCAGACAATACTCTAC---GAGTGTAAATATTACTGGT 71189 |||||| || || ||| ||||||| ||||| ||||| | ||||||| || || ||||| Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425 Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 | | ||||| ||||| |||| | ||||| | ||| ||||| ||||| || Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476 Query 71250 TGC 71252 || Sbjct 7457477 GGC 7457479 >seq3018 Length=3443724 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| |||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || ||||||||||| | ||||| || | || |||||| Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112824229440