Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 365 6e-96
seq3040 134 2e-26
seq3140 123 3e-23
seq3018 102 1e-16
>seq3106
Length=22756556
Score = 365 bits (404), Expect = 6e-96
Identities = 618/892 (69%), Gaps = 10/892 (1%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
|||||||||||||| | || || || || || | || || || || || ||||| |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
|| | || ||||| |||||||| ||||| ||||| || | | ||| || |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938
|||| || || | || || || | ||| || || || ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998
||||| || || || || ||||| | ||| | || || || || || || || |||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAA 42056
|||| ||||| || | | ||| | || ||| || || | || || |
Sbjct 217332 GCGTTGACGATAATC--TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA 217275
Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116
|||||| || ||||| || |||||||| ||||||||||| || || | ||| |||||||
Sbjct 217274 ACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAA 217215
Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176
| ||||| |||||||| || || || || || ||||| || || |||||||| || ||||
Sbjct 217214 AGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAG 217155
Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CAC 42233
|||| ||||| ||||| || || |||||||| | | | || |||||| || |
Sbjct 217154 AAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTT 217095
Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293
|||| ||||| ||||| || | |||| || ||||| ||||| || || |
Sbjct 217094 TGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCGA 217038
Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353
||||||| ||||| | | |||| | |||||| | ||| |||||||| | ||||
Sbjct 217037 TGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGAC 216978
Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413
| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| | ||||
Sbjct 216977 TGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCT 216918
Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473
| || | || |||||| | || || || | ||||| || || ||||| || || |
Sbjct 216917 CTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGC 216858
Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533
|||| ||||| || |||| || ||| |||||| ||| | || || || | | |
Sbjct 216857 TGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTT 216798
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
||| | | || ||||| || | ||| || || ||| |||||||||| || || || |
Sbjct 216797 CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGG 216738
Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| || |||||||| | ||| || ||||| |||| || ||||| || |||||
Sbjct 216737 CTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | ||
Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832
Query 71262 ACTATTTCTAAGACCAT 71278
||| ||||| | |||||
Sbjct 3956831 ACTGTTTCTTACACCAT 3956815
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| ||||||||||| || | || ||||| |||| | |||
Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||||||||| || | ||| || ||| | | || || ||||||| ||
Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 3941647 TCCAGGTAAATAGC 3941634
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| ||| |||| || || || || || | | | |||||| ||||| || || || |
Sbjct 3951802 GAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGG 3951743
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|||||||||||||| || || || || | |||||| || || ||||| || || |||
Sbjct 3951742 GCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTGGGCTTCTGGACTCTCA 3951683
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| ||||| | | || ||||| || ||||| | ||||| || ||||| || || ||
Sbjct 3951682 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTACACCAATTCCAATGGGG 3951623
Query 71554 CTGTGTCTCTTATTAGA 71570
| || | ||||| ||
Sbjct 3951622 CGATGACGTTTATTTGA 3951606
>seq3140
Length=75551126
Score = 123 bits (136), Expect = 3e-23
Identities = 283/423 (67%), Gaps = 16/423 (4%)
Strand=Plus/Plus
Query 70836 TAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 70895
|| ||| ||||| || || || | ||| || ||| || || |||||||| | ||
Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126
Query 70896 TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGC 70955
||| |||| ||| || || || || |||| ||||| |||||||| ||||| |
Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186
Query 70956 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015
|| || || || |||| || | | || | || | |||||||| | | |||||
Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246
Query 71016 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATGGATCCACCATCTGCAAT 71072
|| |||| | ||| || |||| | | ||| |||| | || ||| |||||||
Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306
Query 71073 AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 71132
|||| |||||| || |||||||||||||| || ||| || | | | | | ||
Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365
Query 71133 AGGATTAACTACTTGAAATTCTCCAGACAATACTCTAC---GAGTGTAAATATTACTGGT 71189
|||||| || || ||| ||||||| ||||| ||||| | ||||||| || || |||||
Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425
Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249
| | ||||| ||||| |||| | ||||| | ||| ||||| ||||| ||
Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476
Query 71250 TGC 71252
||
Sbjct 7457477 GGC 7457479
>seq3018
Length=3443724
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | ||| |||||||| | ||||| |||||||| |||||||||||||| |||||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
||||| || ||||||||||| | ||||| || | || ||||||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671112824229440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |