Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq3105 82.4 8e-11
seq3063 82.4 8e-11
>seq3105
Length=21505965
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| ||||||||||| || || | || | |
Sbjct 7417350 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA-T 7417408
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| |||||| || ||||| ||||||| | ||||||||| ||||| || ||||| || |
Sbjct 7417409 CTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 7417468
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || |||| | ||| | |||||| |||||| || | | |
Sbjct 7417469 CCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGG 7417528
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || || || |||||||| || || ||||
Sbjct 7417529 TCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7417562
>seq3063
Length=7952490
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||| | || || || |||| ||||||||||| || |||| || | |
Sbjct 5877715 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCA-T 5877657
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| |||||| || ||||||| | ||||||||| ||||| || ||||| || |
Sbjct 5877656 CTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 5877597
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || |||| | ||| | |||| | ||| || || | | || | |
Sbjct 5877596 CTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGG 5877537
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || || | ||||||||||| || |||||
Sbjct 5877536 TCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506994474334080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |