Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3106 228 1e-54 seq3018 84.2 3e-11 >seq3106 Length=22756556 Score = 228 bits (252), Expect = 1e-54 Identities = 578/867 (67%), Gaps = 29/867 (3%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 || |||||||||||| | ||||| || || || |||||||||||||||||| || ||| Sbjct 216707 TACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAG 216766 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||||| ||||| ||| | | | ||||| | | | | || ||| || | Sbjct 216767 GTGGATCTTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGA---GGAGAGATAC 216823 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 |||||||| ||| || |||| |||||||||| | |||||| || ||||| || ||| || Sbjct 216824 TTTATATCACACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTG 216883 Query 125190 TTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCC 125247 || || ||| |||| |||| | || |||||| ||| || || ||||| |||| Sbjct 216884 GTGGAGCGGTTCAGCCAAGAAGTTCA-AATCACAGAGG-CTCGCTGTTTCTACGGCTTCC 216941 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 | ||| || || ||| | || || ||||||||| | || || || | || || Sbjct 216942 AGATCGCCATGGAAAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCA 217001 Query 125308 GCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT 125366 ||| | || | || | | ||||| || || ||||| || |||| | | | Sbjct 217002 AAGATTC-CAGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCCTGTGT---G 217057 Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||| | | |||| | || ||||| | ||| | || | | || | || | Sbjct 217058 AAGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACTTATGGGGAACGC 217117 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 |||| || || || ||||| || |||||||| ||||| ||| ||||||| | ||||| Sbjct 217118 GTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTC 217177 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||| || |||||||||||||| || || || || | || || Sbjct 217178 TGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 217237 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || |||||||| ||||||||||| ||| || |||| ||| | ||| Sbjct 217238 GATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTT---CAAGCACCTG--------A 217286 Query 125607 TGC--AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 ||| ||| || || | | ||| | | ||| | | | ||||| || || || | Sbjct 217287 TGCATAGACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGC 217346 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | ||||| || || || || | || || | ||||||||||||||||| |||| ||| Sbjct 217347 AGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGA 217406 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGAT 125782 ||||||| ||||| ||||| || | || || ||| | | || | ||||| | Sbjct 217407 AGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTG--GCAAGGT 217464 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 || | | | ||||| ||||| |||||| | || || ||||| || ||||| || Sbjct 217465 TTTTCAAGTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAA 217524 Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||| || ||||||| ||| ||||||| Sbjct 217525 CTTCTTTGAGAAGAGGGTAGGCGAGTA 217551 >seq3018 Length=3443724 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || || || || || |||||||| ||||| ||| ||||||| | ||||| | Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| ||||| || |||||||||||||| || || Sbjct 3376845 GGCTGAAGAAACGGGGACTCATGCCCGGCCTCAC 3376812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030076373440