Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 228 1e-54
seq3018 84.2 3e-11
>seq3106
Length=22756556
Score = 228 bits (252), Expect = 1e-54
Identities = 578/867 (67%), Gaps = 29/867 (3%)
Strand=Plus/Plus
Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069
|| |||||||||||| | ||||| || || || |||||||||||||||||| || |||
Sbjct 216707 TACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAG 216766
Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129
|| ||||| ||||| ||| | | | ||||| | | | | || ||| || |
Sbjct 216767 GTGGATCTTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGA---GGAGAGATAC 216823
Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189
|||||||| ||| || |||| |||||||||| | |||||| || ||||| || ||| ||
Sbjct 216824 TTTATATCACACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTG 216883
Query 125190 TTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCC 125247
|| || ||| |||| |||| | || |||||| ||| || || ||||| ||||
Sbjct 216884 GTGGAGCGGTTCAGCCAAGAAGTTCA-AATCACAGAGG-CTCGCTGTTTCTACGGCTTCC 216941
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
| ||| || || ||| | || || ||||||||| | || || || | || ||
Sbjct 216942 AGATCGCCATGGAAAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCA 217001
Query 125308 GCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT 125366
||| | || | || | | ||||| || || ||||| || |||| | | |
Sbjct 217002 AAGATTC-CAGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCCTGTGT---G 217057
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| ||| | | |||| | || ||||| | ||| | || | | || | || |
Sbjct 217058 AAGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACTTATGGGGAACGC 217117
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|||| || || || ||||| || |||||||| ||||| ||| ||||||| | |||||
Sbjct 217118 GTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTC 217177
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||| ||||| || |||||||||||||| || || || || | || ||
Sbjct 217178 TGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 217237
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606
|| |||||||| ||||||||||| ||| || |||| ||| | |||
Sbjct 217238 GATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTT---CAAGCACCTG--------A 217286
Query 125607 TGC--AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664
||| ||| || || | | ||| | | ||| | | | ||||| || || || |
Sbjct 217287 TGCATAGACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGC 217346
Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724
| ||||| || || || || | || || | ||||||||||||||||| |||| |||
Sbjct 217347 AGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGA 217406
Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGAT 125782
||||||| ||||| ||||| || | || || ||| | | || | ||||| |
Sbjct 217407 AGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTG--GCAAGGT 217464
Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842
|| | | | ||||| ||||| |||||| | || || ||||| || ||||| ||
Sbjct 217465 TTTTCAAGTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAA 217524
Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
||| || ||||||| ||| |||||||
Sbjct 217525 CTTCTTTGAGAAGAGGGTAGGCGAGTA 217551
>seq3018
Length=3443724
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || || || || || || |||||||| ||||| ||| ||||||| | ||||| |
Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|||| ||||| || |||||||||||||| || ||
Sbjct 3376845 GGCTGAAGAAACGGGGACTCATGCCCGGCCTCAC 3376812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741030076373440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |