Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3063 95.1 8e-15
seq3082 91.5 9e-14
>seq3063
Length=7952490
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || ||||| |||| || ||||||||||||||| || | ||
Sbjct 5877715 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 5877656
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT--- 33273
|||| |||||| ||| ||| || | | |||||| || | || || ||||| ||
Sbjct 5877655 TTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5877596
Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| | | | ||| ||||| ||| || |||| | ||| | ||| | || || ||
Sbjct 5877595 TTGGATCTTGGCC---TTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGAT 5877539
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| | |||||||| |||||||||||||| ||||| ||
Sbjct 5877538 GGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500
>seq3082
Length=10725151
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | |||| ||||| |||| || |||||||| || || ||||| |||||
Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| | || | || |||| ||||| || ||| || | | |||||||| | ||
Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | | ||| || || | | ||| |||||| |||| |
Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCC---TTCACATTCTCAATGGTGTCGCTGGGCTCC 1251287
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || || || || || ||||| || ||||| || |||||
Sbjct 1251286 ACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318765385239312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |