Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 82.4 6e-11
>seq3082
Length=10725151
Score = 82.4 bits (90), Expect = 6e-11
Identities = 163/239 (68%), Gaps = 3/239 (1%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
|| ||||| || || || || ||||| || |||||||| || | ||| | |||
Sbjct 1251221 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251162
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
||||| || ||||| ||| | || |||||||| || || || | |||||| || ||
Sbjct 1251161 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATC 1251102
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
|| || ||||| | ||| | |||| || ||| |||| ||| |||||
Sbjct 1251101 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGT 1251042
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA--AACTCTTATAAATGACAAA 20232
||||| |||| ||||| || || ||||||||||| | || ||| ||||||||||
Sbjct 1251041 CTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGACCTACAATTA-AAATGACAAA 1250984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419571122467464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |