Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3082 82.4 6e-11 >seq3082 Length=10725151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||| || || || || ||||| || |||||||| || | ||| | ||| Sbjct 1251221 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251162 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || ||||| ||| | || |||||||| || || || | |||||| || || Sbjct 1251161 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATC 1251102 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||||| | ||| | |||| || ||| |||| ||| ||||| Sbjct 1251101 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGT 1251042 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA--AACTCTTATAAATGACAAA 20232 ||||| |||| ||||| || || ||||||||||| | || ||| |||||||||| Sbjct 1251041 CTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGACCTACAATTA-AAATGACAAA 1250984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571122467464