Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 235 5e-57
seq3143 86.0 5e-12
seq3018 82.4 7e-11
>seq3106
Length=22756556
Score = 235 bits (260), Expect = 5e-57
Identities = 577/871 (66%), Gaps = 19/871 (2%)
Strand=Plus/Minus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
|||||||| ||| | ||||| |||| || || || ||||| |||||||| || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTC----GAACAATAGTATTTTTT 12960
|||| |||||||| ||||| || || || ||||||| | ||| || ||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACC----TTGCC 217457
Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
| | || | ||||| | | |||||||| || ||||| |||||||| ||||| | ||
Sbjct 217456 AAAGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTC 217397
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
|||||||| || || | || || |||| || || || | || | | || ||
Sbjct 217396 GCAGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCT 217337
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140
|| || | || | || || | | | |||| | || || || |||||
Sbjct 217336 GACGGCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTT 217277
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
||||||| || || || |||||||||| || |||||||| || || || || || ||
Sbjct 217276 GAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGA 217217
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
||| || || || ||||| || || ||||| || | ||| || || | ||||| |||||
Sbjct 217216 AAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACC 217157
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320
|||||||| || ||||| || || ||||| |||| || | ||| ||||| || |
Sbjct 217156 AGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTC 217097
Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380
||| | | ||||| |||||||| | || | | || ||| ||| | ||
Sbjct 217096 TTTGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCT---TCACACAGGGCATGGTCTC 217040
Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440
|| || || || | | | |||| | ||| ||||||||||| || | |
Sbjct 217039 GATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAG 216980
Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
|| |||||||| |||||||| |||||||| || || ||||| || || ||||| | |||
Sbjct 216979 ACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGC 216920
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
||||| | |||||||| | || | || | || || || || ||||| || ||
Sbjct 216919 CTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATC 216860
Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACA 13616
|| || ||||| ||||| || | ||| ||||| | | | || | ||| |
Sbjct 216859 GCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTC--AGG 216802
Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676
||| ||| | ||| ||||| || | ||| |||||||| | |||||||| || |
Sbjct 216801 GCTT--CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGG 216744
Query 13677 CAACAGCCTTCTTATACATCATCCATATATC 13707
| | || |||||||||||| ||| || ||
Sbjct 216743 CCTCGGCTTTCTTATACATCTGCCAAATGTC 216713
>seq3143
Length=88675666
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| ||| ||||| || ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 4813948 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4813889
Query 12923 ATAAAATCGAAAGGATTTTTCG 12944
|||||||| || ||||||| ||
Sbjct 4813888 ATAAAATCAAAGGGATTTTCCG 4813867
>seq3018
Length=3443724
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480
||||||||||| || | | || |||||||| |||||||| |||||||| || || |||
Sbjct 3378011 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3378070
Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
|| || || ||||| | |||||||| | ||||||||
Sbjct 3378071 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430965885831888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |