Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3106 235 5e-57 seq3143 86.0 5e-12 seq3018 82.4 7e-11 >seq3106 Length=22756556 Score = 235 bits (260), Expect = 5e-57 Identities = 577/871 (66%), Gaps = 19/871 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| ||| | ||||| |||| || || || ||||| |||||||| || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTC----GAACAATAGTATTTTTT 12960 |||| |||||||| ||||| || || || ||||||| | ||| || || Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACC----TTGCC 217457 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | ||||| | | |||||||| || ||||| |||||||| ||||| | || Sbjct 217456 AAAGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTC 217397 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 |||||||| || || | || || |||| || || || | || | | || || Sbjct 217396 GCAGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCT 217337 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 || || | || | || || | | | |||| | || || || ||||| Sbjct 217336 GACGGCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTT 217277 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| || || || |||||||||| || |||||||| || || || || || || Sbjct 217276 GAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGA 217217 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 ||| || || || ||||| || || ||||| || | ||| || || | ||||| ||||| Sbjct 217216 AAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACC 217157 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 |||||||| || ||||| || || ||||| |||| || | ||| ||||| || | Sbjct 217156 AGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTC 217097 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| | | ||||| |||||||| | || | | || ||| ||| | || Sbjct 217096 TTTGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCT---TCACACAGGGCATGGTCTC 217040 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || || || || | | | |||| | ||| ||||||||||| || | | Sbjct 217039 GATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAG 216980 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 || |||||||| |||||||| |||||||| || || ||||| || || ||||| | ||| Sbjct 216979 ACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGC 216920 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||||| | |||||||| | || | || | || || || || ||||| || || Sbjct 216919 CTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATC 216860 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACA 13616 || || ||||| ||||| || | ||| ||||| | | | || | ||| | Sbjct 216859 GCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTC--AGG 216802 Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676 ||| ||| | ||| ||||| || | ||| |||||||| | |||||||| || | Sbjct 216801 GCTT--CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGG 216744 Query 13677 CAACAGCCTTCTTATACATCATCCATATATC 13707 | | || |||||||||||| ||| || || Sbjct 216743 CCTCGGCTTTCTTATACATCTGCCAAATGTC 216713 >seq3143 Length=88675666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| ||| ||||| || ||||| || |||||||| |||||||| ||||| |||||| Sbjct 4813948 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4813889 Query 12923 ATAAAATCGAAAGGATTTTTCG 12944 |||||||| || ||||||| || Sbjct 4813888 ATAAAATCAAAGGGATTTTCCG 4813867 >seq3018 Length=3443724 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||||||||| || | | || |||||||| |||||||| |||||||| || || ||| Sbjct 3378011 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3378070 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || || || ||||| | |||||||| | |||||||| Sbjct 3378071 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965885831888