Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 107 2e-18
>seq3131
Length=50742376
Score = 107 bits (118), Expect = 2e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933
|| ||||| || ||||| || | || |||||||| |||||||| | | |||||||||
Sbjct 16183887 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGATG 16183946
Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993
|| |||| |||||||| | || |||||||| || || || | ||| ||||| ||||||
Sbjct 16183947 CCCAAGGCAGAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAAAG 16184006
Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025
|| || || || | || || ||||| |||||
Sbjct 16184007 CTGAAGACCCTCAGGCTGCGGCTGCGACGCTG 16184038
Score = 84.2 bits (92), Expect = 2e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163
|||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | |||||
Sbjct 16186012 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 16186071
Query 129164 GACTACTAAAT 129174
||| | ||||
Sbjct 16186072 GACAAGGAAAT 16186082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447732803409280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |