Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3131 107 2e-18 >seq3131 Length=50742376 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| |||||||| | | ||||||||| Sbjct 16183887 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGATG 16183946 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || |||| |||||||| | || |||||||| || || || | ||| ||||| |||||| Sbjct 16183947 CCCAAGGCAGAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAAAG 16184006 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || || ||||| ||||| Sbjct 16184007 CTGAAGACCCTCAGGCTGCGGCTGCGACGCTG 16184038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 16186012 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 16186071 Query 129164 GACTACTAAAT 129174 ||| | |||| Sbjct 16186072 GACAAGGAAAT 16186082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447732803409280