Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 118 9e-22
>seq3131
Length=50742376
Score = 118 bits (130), Expect = 9e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230
|| |||||||| |||| |||||||| ||||| || || | ||||| ||||| |||||
Sbjct 16183896 GGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGATGCCCAAGGCA 16183955
Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290
|||||||| | || ||||| || ||||| || | |||||||| ||||||||||||||
Sbjct 16183956 GAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAAAGCTGAAGACC 16184015
Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313
| || || || ||||| |||||
Sbjct 16184016 CTCAGGCTGCGGCTGCGACGCTG 16184038
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438
|||| || || | |||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 16185999 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16186058
Query 127439 TCGAGACTTACATG 127452
| || | ||||||
Sbjct 16186059 TAGAAGCCTACATG 16186072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430037921390528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |