Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3131 118 9e-22 >seq3131 Length=50742376 Score = 118 bits (130), Expect = 9e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| || || | ||||| ||||| ||||| Sbjct 16183896 GGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGATGCCCAAGGCA 16183955 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 |||||||| | || ||||| || ||||| || | |||||||| |||||||||||||| Sbjct 16183956 GAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAAAGCTGAAGACC 16184015 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || || || ||||| ||||| Sbjct 16184016 CTCAGGCTGCGGCTGCGACGCTG 16184038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || | |||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 16185999 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16186058 Query 127439 TCGAGACTTACATG 127452 | || | |||||| Sbjct 16186059 TAGAAGCCTACATG 16186072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430037921390528