Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3129 96.9 2e-15 >seq3129 Length=43247874 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || |||||||| ||||| || ||||||||| ||||| ||||| Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| || | |||||| |||||||| || | || ||| Sbjct 41738205 ACGCCCAGGCCCATGT-CCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCAC 41738147 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | ||||| || ||||| || || || || Sbjct 41738146 CACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCATCAG 41738102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340124566777512