Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3113 170 2e-37 >seq3113 Length=25888900 Score = 170 bits (188), Expect = 2e-37 Identities = 478/726 (66%), Gaps = 22/726 (3%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||||| |||||| |||||||| |||| || || || ||||||||| |||||| Sbjct 13629316 ATTGGAACTTTGAAAAAATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGATATTTTTC 13629375 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 |||||||||||||||| || | ||||| || || | || | | || ||||||| Sbjct 13629376 GACGAGCATTTGCTTCCCGAGTATTTCCTCCAGAGATTGTGGAACAGATGGGTTGTAAAC 13629435 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| || | ||| |||| || || || || ||||| || | |||||| | Sbjct 13629436 ATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGATGTGGTAAGACTCTCTTGGCTCTAC 13629495 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| |||| | || ||| | || || ||| | || ||||| || ||| Sbjct 13629496 AGATTG-GCAAGATGTTGAATGCAAGAGAGCC--CAAAGTGGTCAATGGACCAGAAAATC 13629552 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT-AGAAAGTTGTTTCAGGAGGCTGAA 164688 | ||||||||||| ||||| ||||| ||||| || | ||| || ||| || |||||| Sbjct 13629553 TTAACAAATATGTGGGTGAATCAGAGGCTAACATTCACAAACTT-TTTGCTGATGCTGAA 13629611 Query 164689 GAAGAACAAAAGAAAGCAGGT-TTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGAT 164747 || || |||| || ||| || | | | || || | || | |||||||| || Sbjct 13629612 GAGGAGCAAAGGAGGCTTGGTGCTAAC-ACTGGTTTGCACATCATCATCTTTGATGAAAT 13629670 Query 164748 AGATGCTCTTTGCAAAAAACGTGG---------TGATAATATT---ATTCATGATGCAGT 164795 ||||| | |||||| | | || || || | | ||||| | | || Sbjct 13629671 TGATGCCATCTGCAAACAGAGAGGGAGCATGGCTGGTAGCACTGGGATTCACAACACTGT 13629730 Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 || ||||||||| | || ||||| ||||| ||||| | || || || | | | Sbjct 13629731 TGTCAATCAGTTGTTGTCCAAAATTGATGGGGTAGAGCAGCTGAACAACATCCTTGTCAT 13629790 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 || |||||||| |||| ||| | |||||||| ||| | | | |||||| || | || Sbjct 13629791 TGGAATGACCAATAGACCAGATCTGATTGATGAGGCTCTCCTTCAACCTGGAAGACTGGA 13629850 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975 | | ||||| || ||||| || || || | |||| || || || || | | | || Sbjct 13629851 AGTCAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACTACAGATCCTTCACATCCA 13629910 Query 164976 TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGC 165035 || | |||| | | | | | | ||| | ||||||||| | || || | || Sbjct 13629911 CACAGCAAGGATGAGAGACCATCAATTGCTCTCTACTGATGTAGATATTAAAGAACTGGC 13629970 Query 165036 TGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATC 165095 || || || || |||| |||||||||||| | ||||| | || |||| || || || Sbjct 13629971 TGTGGAGACCAAGAATTTCAGTGGTGCTGAACTGGAGGGTCTGGTGCGAGCAGCACAGTC 13630030 Query 165096 AACCGC 165101 || || Sbjct 13630031 CACTGC 13630036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595848582230400