Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq3113 170 2e-37
>seq3113
Length=25888900
Score = 170 bits (188), Expect = 2e-37
Identities = 478/726 (66%), Gaps = 22/726 (3%)
Strand=Plus/Plus
Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452
||||||| |||||| |||||||| |||| || || || ||||||||| ||||||
Sbjct 13629316 ATTGGAACTTTGAAAAAATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGATATTTTTC 13629375
Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512
|||||||||||||||| || | ||||| || || | || | | || |||||||
Sbjct 13629376 GACGAGCATTTGCTTCCCGAGTATTTCCTCCAGAGATTGTGGAACAGATGGGTTGTAAAC 13629435
Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572
|| | ||||| || | ||| |||| || || || || ||||| || | |||||| |
Sbjct 13629436 ATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGATGTGGTAAGACTCTCTTGGCTCTAC 13629495
Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629
|||| |||| | || ||| | || || ||| | || ||||| || |||
Sbjct 13629496 AGATTG-GCAAGATGTTGAATGCAAGAGAGCC--CAAAGTGGTCAATGGACCAGAAAATC 13629552
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT-AGAAAGTTGTTTCAGGAGGCTGAA 164688
| ||||||||||| ||||| ||||| ||||| || | ||| || ||| || ||||||
Sbjct 13629553 TTAACAAATATGTGGGTGAATCAGAGGCTAACATTCACAAACTT-TTTGCTGATGCTGAA 13629611
Query 164689 GAAGAACAAAAGAAAGCAGGT-TTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGAT 164747
|| || |||| || ||| || | | | || || | || | |||||||| ||
Sbjct 13629612 GAGGAGCAAAGGAGGCTTGGTGCTAAC-ACTGGTTTGCACATCATCATCTTTGATGAAAT 13629670
Query 164748 AGATGCTCTTTGCAAAAAACGTGG---------TGATAATATT---ATTCATGATGCAGT 164795
||||| | |||||| | | || || || | | ||||| | | ||
Sbjct 13629671 TGATGCCATCTGCAAACAGAGAGGGAGCATGGCTGGTAGCACTGGGATTCACAACACTGT 13629730
Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855
|| ||||||||| | || ||||| ||||| ||||| | || || || | | |
Sbjct 13629731 TGTCAATCAGTTGTTGTCCAAAATTGATGGGGTAGAGCAGCTGAACAACATCCTTGTCAT 13629790
Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915
|| |||||||| |||| ||| | |||||||| ||| | | | |||||| || | ||
Sbjct 13629791 TGGAATGACCAATAGACCAGATCTGATTGATGAGGCTCTCCTTCAACCTGGAAGACTGGA 13629850
Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975
| | ||||| || ||||| || || || | |||| || || || || | | | ||
Sbjct 13629851 AGTCAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACTACAGATCCTTCACATCCA 13629910
Query 164976 TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGC 165035
|| | |||| | | | | | | ||| | ||||||||| | || || | ||
Sbjct 13629911 CACAGCAAGGATGAGAGACCATCAATTGCTCTCTACTGATGTAGATATTAAAGAACTGGC 13629970
Query 165036 TGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATC 165095
|| || || || |||| |||||||||||| | ||||| | || |||| || || ||
Sbjct 13629971 TGTGGAGACCAAGAATTTCAGTGGTGCTGAACTGGAGGGTCTGGTGCGAGCAGCACAGTC 13630030
Query 165096 AACCGC 165101
|| ||
Sbjct 13630031 CACTGC 13630036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595848582230400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |