Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 86.0 3e-12
seq3032 84.2 1e-11
seq3105 82.4 4e-11
seq3035 82.4 4e-11
>seq3082
Length=10725151
Score = 86.0 bits (94), Expect = 3e-12
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 8494964 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8495023
Query 11528 CC-GTCGACGA 11537
|| ||||| ||
Sbjct 8495024 CCAGTCGATGA 8495034
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 7257660 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7257719
Query 11528 CC 11529
||
Sbjct 7257720 CC 7257721
>seq3032
Length=4486175
Score = 84.2 bits (92), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 11426 GGGAAAT--ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGAC 11483
||||||| ||| || || |||||| | |||||| | |||||||||| ||||
Sbjct 2385604 GGGAAATGAATAAAAGAAAAAAAAAAA-ACCCTGGCCCGTACGGGGATCGAACCCGCGAC 2385546
Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 2385545 CTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 2385500
>seq3105
Length=21505965
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 21199145 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21199086
Query 11528 CC 11529
||
Sbjct 21199085 CC 21199084
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 21331874 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21331815
Query 11528 CC 11529
||
Sbjct 21331814 CC 21331813
>seq3035
Length=4563218
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1698865 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1698924
Query 11528 CC 11529
||
Sbjct 1698925 CC 1698926
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1708345 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1708404
Query 11528 CC 11529
||
Sbjct 1708405 CC 1708406
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1854152 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1854211
Query 11528 CC 11529
||
Sbjct 1854212 CC 1854213
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1874092 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1874033
Query 11528 CC 11529
||
Sbjct 1874032 CC 1874031
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261481180310944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |