Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 114 1e-20
>seq3131
Length=50742376
Score = 114 bits (126), Expect = 1e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| || |||||||||||||| || | ||| || |
Sbjct 16183885 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGA 16183944
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||| |||||||| ||||| || ||| || || || | ||| ||||| || |
Sbjct 16183945 TGCCCAAGGCAGAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAA 16184004
Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287
| || |||||||| ||||| || ||||
Sbjct 16184005 AGCTGAAGACCCTCAGGCTGCGGCTGCG 16184032
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 16185999 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16186058
Query 10419 TAGAAGCATACATGACCATGAAA 10441
||||||| |||||||| | ||||
Sbjct 16186059 TAGAAGCCTACATGACAAGGAAA 16186081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547357687997440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |