Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3131 154 2e-32 seq3116 129 8e-25 >seq3131 Length=50742376 Score = 154 bits (170), Expect = 2e-32 Identities = 204/283 (72%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| || || ||||| | |||| ||||||||||| | ||| | ||||||||| | Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| ||||| || || || || || |||||||| || ||||| || ||| Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | ||| || || || |||| ||| | ||| |||| ||||| || Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 |||| || || || |||||||| | | ||| |||| ||||| || || ||||| Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| ||||| | ||| ||||| |||||||| || |||| Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34218655 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| |||| ||| ||| |||||||| || |||| || |||||||||||| Sbjct 34217324 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34217265 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || |||| |||||||| || ||||||||||| || || |||||||| || || Sbjct 34217264 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34217205 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || || ||||| | | ||| || || ||||| | Sbjct 34217204 ACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGGTACATCATCTCT 34217145 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 || || |||||||| | ||| || ||||| || || ||||| |||| Sbjct 34217144 ACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34217096 Score = 102 bits (112), Expect = 1e-16 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || Sbjct 34217855 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34217796 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTT-AATGTAGTCATACTTTGTTTTATCAATC 9438 | | ||| || |||||||| | || ||| || || | | |||| || |||||| Sbjct 34217795 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34217739 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | || |||| || | |||||||||||||| | |||||||||||||| || Sbjct 34217738 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34217679 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || || ||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 34217678 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34217620 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 || || ||||| | ||||| ||||| Sbjct 34217619 ATGATACCCGCTCAAATGCTGTACATA 34217593 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| ||||||| | ||||| || || || || ||| | | | ||| Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || || ||||| ||| |||| || || ||||| | || ||||| |||||||| Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| |||| | |||||| |||||||| ||| Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAAC 34215776 >seq3116 Length=27942054 Score = 129 bits (142), Expect = 8e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8669 TTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGG 8728 ||||| || ||||| | | | | ||||| ||| |||| |||||||| || Sbjct 11714656 TTGGGCACGCGGAAAGAGACGTAGGGACAGGTCTTGGTGTTGAGGCAGACTAGCTTCTTC 11714715 Query 8729 ATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAG 8788 | || || | ||||||| || ||||| || || || || ||||| || |||||| Sbjct 11714716 AGTGTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAG 11714775 Query 8789 TAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGC 8848 || ||||||||||||| || ||| ||| || ||||||||||| |||||||| | | Sbjct 11714776 TACTGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATC 11714835 Query 8849 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8908 |||| || ||||| || ||||||| ||| || || ||||| | | ||||| | | Sbjct 11714836 TCGATCATACTCTCCCCAAAGATGGAGTTCGGTAGGCATTTTTCAAGGAGCAATCCTGGG 11714895 Query 8909 TACAACTCCACAGCCTCGATGTCTCCGTA 8937 || ||||| | ||| ||||||||||| || Sbjct 11714896 TAGAACTCTAAAGCATCGATGTCTCCATA 11714924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708496954975360