Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 154 2e-32
seq3116 129 8e-25
>seq3131
Length=50742376
Score = 154 bits (170), Expect = 2e-32
Identities = 204/283 (72%), Gaps = 0/283 (0%)
Strand=Plus/Minus
Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752
||||| || || ||||| | |||| ||||||||||| | ||| | ||||||||| |
Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| ||||| || || || || || |||||||| || ||||| || |||
Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
|||| || ||||| | ||| || || || |||| ||| | ||| |||| ||||| ||
Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
|||| || || || |||||||| | | ||| |||| ||||| || || |||||
Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
||||| ||||| | ||| ||||| |||||||| || ||||
Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34218655
Score = 147 bits (162), Expect = 3e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| ||||| |||| ||| ||| |||||||| || |||| || ||||||||||||
Sbjct 34217324 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34217265
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| || |||| |||||||| || ||||||||||| || || |||||||| || ||
Sbjct 34217264 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34217205
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | || || ||||| | | ||| || || ||||| |
Sbjct 34217204 ACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGGTACATCATCTCT 34217145
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|| || |||||||| | ||| || ||||| || || ||||| ||||
Sbjct 34217144 ACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34217096
Score = 102 bits (112), Expect = 1e-16
Identities = 187/267 (70%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| || ||||| ||||| || | |||||||| || ||
Sbjct 34217855 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34217796
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTT-AATGTAGTCATACTTTGTTTTATCAATC 9438
| | ||| || |||||||| | || ||| || || | | |||| || ||||||
Sbjct 34217795 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34217739
Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498
| ||| | || |||| || | |||||||||||||| | |||||||||||||| ||
Sbjct 34217738 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34217679
Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557
|| || ||||||||||| | | ||| ||||| || || | |||| || | ||
Sbjct 34217678 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34217620
Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584
|| || ||||| | ||||| |||||
Sbjct 34217619 ATGATACCCGCTCAAATGCTGTACATA 34217593
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
||||||||||| ||||||| | ||||| || || || || ||| | | | |||
Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
||||| || || ||||| ||| |||| || || ||||| | || ||||| ||||||||
Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814
Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186
|| |||| |||| | |||||| |||||||| |||
Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAAC 34215776
>seq3116
Length=27942054
Score = 129 bits (142), Expect = 8e-25
Identities = 190/269 (71%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 8669 TTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGG 8728
||||| || ||||| | | | | ||||| ||| |||| |||||||| ||
Sbjct 11714656 TTGGGCACGCGGAAAGAGACGTAGGGACAGGTCTTGGTGTTGAGGCAGACTAGCTTCTTC 11714715
Query 8729 ATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAG 8788
| || || | ||||||| || ||||| || || || || ||||| || ||||||
Sbjct 11714716 AGTGTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAG 11714775
Query 8789 TAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGC 8848
|| ||||||||||||| || ||| ||| || ||||||||||| |||||||| | |
Sbjct 11714776 TACTGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATC 11714835
Query 8849 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8908
|||| || ||||| || ||||||| ||| || || ||||| | | ||||| | |
Sbjct 11714836 TCGATCATACTCTCCCCAAAGATGGAGTTCGGTAGGCATTTTTCAAGGAGCAATCCTGGG 11714895
Query 8909 TACAACTCCACAGCCTCGATGTCTCCGTA 8937
|| ||||| | ||| ||||||||||| ||
Sbjct 11714896 TAGAACTCTAAAGCATCGATGTCTCCATA 11714924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708496954975360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |