Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3105 159 5e-35 >seq3105 Length=21505965 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 20550790 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCATC 20550731 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || ||||| ||||| || |||| || | ||||||| |||| | Sbjct 20550730 CGCCGCCTGGCCCGCCGCGGTGGCGTCAAACGCATCTCCGGTCTCATCTATGAGGAGACT 20550671 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| || ||| Sbjct 20550670 AGAGGCGTTCTCAAGGTCTTCCTGGAGAACGTGATCCGCGATGCTGTCACCTACACGGAG 20550611 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| |||||||| | ||||| || | || || || || Sbjct 20550610 CACGCCAAACGCAAGACAGTCACTGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGA 20550551 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||||||||| | |||| Sbjct 20550550 CGCACCCTCTATGGTTTTGGGGGCTAAT 20550523 Score = 152 bits (168), Expect = 8e-33 Identities = 192/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||||| | || || || || |||||||| || ||||| ||||| || || Sbjct 20581628 GCTAAGCGCCATCGCAAGGTC-CTGCGCGACAACATCCAGGGGATCACTAAGCCCGCCAT 20581570 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || |||||||| |||||||| | ||||| | | ||||| |||| Sbjct 20581569 CCGCCGCCTGGCCCGCCGTGGTGGTGTCAAGCGCATTTCTGGCCTTATTTATGAGGAGAC 20581510 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| |||| ||| || || || || || Sbjct 20581509 TCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTAATCCGTGACGCGGTCACTTACACGGA 20581450 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 20581449 GCACGCTAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20581390 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 20581389 ACGCACGCTCTACGGCTTCGG 20581369 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || |||||||| || |||||||||||||| || Sbjct 20501155 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCAGCCAT 20501096 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || || |||||||| ||||| || | ||||| | ||||||| |||| Sbjct 20501095 CCGTCGCCTAGCCCGCCGTGGTGGCGTCAAACGAATTTCTGGCCTAATCTATGAGGAGAC 20501036 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 20501035 CCGCGGCGTACTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20500976 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 20500975 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20500916 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 20500915 ACGCACGCTCTACGGCTTCGG 20500895 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | | || || |||||||| || ||||||||||| || || Sbjct 20523974 CGCCAAGCGCCACCGCAAGGTTTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 20524033 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || ||||| |||||||| | ||||| | ||||||| |||| Sbjct 20524034 CCGCCGCCTGGCCCGCCGCGGTGGTGTCAAGCGCATTTCTGGCCTCATCTATGAGGAGAC 20524093 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 20524094 CCGCGGCGTACTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20524153 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 20524154 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20524213 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || ||||| Sbjct 20524214 ACGCACGCTCTACGGCTTTGG 20524234 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | || || || |||||||| || |||||||| || || || Sbjct 20436326 CGCTAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAACCTGCCAT 20436385 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || |||||||| || || || ||||||| | ||||||| |||| Sbjct 20436386 CCGCCGCCTGGCCCGCCGTGGTGGTGTTAAACGCATCTCTGGCCTCATCTATGAGGAGAC 20436445 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 20436446 CCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20436505 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 20436506 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20436565 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 20436566 ACGCACGCTCTACGGCTTCGG 20436586 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | || || || |||||||| || ||||||||||| || ||| Sbjct 20543627 GCTAAGCGCCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 20543686 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || |||||||| || || || |||| || | ||||||| |||| Sbjct 20543687 CGCCGCCTGGCCCGCCGTGGTGGTGTTAAACGCATCTCCGGTCTCATCTATGAGGAGACC 20543746 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| || |||| || || || ||| || ||| Sbjct 20543747 CGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGAG 20543806 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 20543807 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGA 20543866 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || || ||||| Sbjct 20543867 CGCACGCTCTACGGCTTCGGCGGTTAA 20543893 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 20366425 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 20366484 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||| || || || || ||||| || |||| || | ||||||| || | Sbjct 20366485 CCGCCGCTTGGCCCGCCGCGGCGGCGTCAAACGCATCTCCGGCCTCATCTATGAGGAAAC 20366544 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| || |||| || || || ||| || || Sbjct 20366545 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCGGTCACCTACACGGA 20366604 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | |||||||| | || || || || Sbjct 20366605 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 20366664 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || ||||| Sbjct 20366665 ACGCACGCTCTACGGCTTTGG 20366685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072325418792