Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3105 159 5e-35
>seq3105
Length=21505965
Score = 159 bits (176), Expect = 5e-35
Identities = 196/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| || || || |||||||| || ||||||||||| || |||
Sbjct 20550790 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCATC 20550731
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||| || || ||||| ||||| || |||| || | ||||||| |||| |
Sbjct 20550730 CGCCGCCTGGCCCGCCGCGGTGGCGTCAAACGCATCTCCGGTCTCATCTATGAGGAGACT 20550671
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| || |||
Sbjct 20550670 AGAGGCGTTCTCAAGGTCTTCCTGGAGAACGTGATCCGCGATGCTGTCACCTACACGGAG 20550611
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||||| ||||| ||||| |||||||| | ||||| || | || || || ||
Sbjct 20550610 CACGCCAAACGCAAGACAGTCACTGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGA 20550551
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|| | | ||||||||||| | ||||
Sbjct 20550550 CGCACCCTCTATGGTTTTGGGGGCTAAT 20550523
Score = 152 bits (168), Expect = 8e-33
Identities = 192/261 (74%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| ||||||| | || || || || |||||||| || ||||| ||||| || ||
Sbjct 20581628 GCTAAGCGCCATCGCAAGGTC-CTGCGCGACAACATCCAGGGGATCACTAAGCCCGCCAT 20581570
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || |||||||| |||||||| | ||||| | | ||||| ||||
Sbjct 20581569 CCGCCGCCTGGCCCGCCGTGGTGGTGTCAAGCGCATTTCTGGCCTTATTTATGAGGAGAC 20581510
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || | ||| ||||||| ||| ||| |||| ||| || || || || ||
Sbjct 20581509 TCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTAATCCGTGACGCGGTCACTTACACGGA 20581450
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 20581449 GCACGCTAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20581390
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 20581389 ACGCACGCTCTACGGCTTCGG 20581369
Score = 141 bits (156), Expect = 1e-29
Identities = 188/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | || || || |||||||| || |||||||||||||| ||
Sbjct 20501155 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCAGCCAT 20501096
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| || || || |||||||| ||||| || | ||||| | ||||||| ||||
Sbjct 20501095 CCGTCGCCTAGCCCGCCGTGGTGGCGTCAAACGAATTTCTGGCCTAATCTATGAGGAGAC 20501036
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 20501035 CCGCGGCGTACTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20500976
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 20500975 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20500916
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 20500915 ACGCACGCTCTACGGCTTCGG 20500895
Score = 141 bits (156), Expect = 1e-29
Identities = 188/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | | || || |||||||| || ||||||||||| || ||
Sbjct 20523974 CGCCAAGCGCCACCGCAAGGTTTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 20524033
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || ||||| |||||||| | ||||| | ||||||| ||||
Sbjct 20524034 CCGCCGCCTGGCCCGCCGCGGTGGTGTCAAGCGCATTTCTGGCCTCATCTATGAGGAGAC 20524093
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 20524094 CCGCGGCGTACTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20524153
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 20524154 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20524213
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || |||||
Sbjct 20524214 ACGCACGCTCTACGGCTTTGG 20524234
Score = 138 bits (152), Expect = 2e-28
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | || || || |||||||| || |||||||| || || ||
Sbjct 20436326 CGCTAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAACCTGCCAT 20436385
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || |||||||| || || || ||||||| | ||||||| ||||
Sbjct 20436386 CCGCCGCCTGGCCCGCCGTGGTGGTGTTAAACGCATCTCTGGCCTCATCTATGAGGAGAC 20436445
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 20436446 CCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 20436505
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 20436506 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20436565
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 20436566 ACGCACGCTCTACGGCTTCGG 20436586
Score = 131 bits (144), Expect = 3e-26
Identities = 189/267 (71%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || || | || || || |||||||| || ||||||||||| || |||
Sbjct 20543627 GCTAAGCGCCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 20543686
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||| || |||||||| || || || |||| || | ||||||| ||||
Sbjct 20543687 CGCCGCCTGGCCCGCCGTGGTGGTGTTAAACGCATCTCCGGTCTCATCTATGAGGAGACC 20543746
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | ||| ||||||| ||| || |||| || || || ||| || |||
Sbjct 20543747 CGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGAG 20543806
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 20543807 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGA 20543866
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | | || || || || |||||
Sbjct 20543867 CGCACGCTCTACGGCTTCGGCGGTTAA 20543893
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 20366425 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 20366484
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||| || || || || ||||| || |||| || | ||||||| || |
Sbjct 20366485 CCGCCGCTTGGCCCGCCGCGGCGGCGTCAAACGCATCTCCGGCCTCATCTATGAGGAAAC 20366544
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| || |||| || || || ||| || ||
Sbjct 20366545 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCGGTCACCTACACGGA 20366604
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | |||||||| | || || || ||
Sbjct 20366605 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 20366664
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || |||||
Sbjct 20366665 ACGCACGCTCTACGGCTTTGG 20366685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072325418792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |