Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 163 3e-35
>seq3106
Length=22756556
Score = 163 bits (180), Expect = 3e-35
Identities = 517/802 (64%), Gaps = 9/802 (1%)
Strand=Plus/Minus
Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187
||||| |||||||| |||| |||| ||| || | ||||||| |||||| |
Sbjct 217614 TAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCTC 217555
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
||||| || | || || || || || || |||||||| ||||| | || ||| |||
Sbjct 217554 TGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCC 217495
Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307
|| || |||||||||||||| || ||| | || | | ||||| ||| | |
Sbjct 217494 ATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGC 217435
Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367
|| || || || || || || || || ||| | || || ||||| || |||| ||
Sbjct 217434 CTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTC 217375
Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427
|| || | || | || | || | || || |||||| | || || || |
Sbjct 217374 ACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCTCC 217315
Query 21428 ATTATCCTAGATGTACTAGGGGGATA--CAATAATTGTTTAAACATCAAACATGCAAAAT 21485
| | ||| || || ||| || || | || || ||||||| || || || |
Sbjct 217314 TTCACCCTC--TGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257
Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545
|||| |||| || ||||| || || || | |||||| ||||| || | |||||||| |
Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197
Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605
||| | || || | ||| || || |||||||| | || ||||| || ||||| || |
Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137
Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665
|||||||||| || || | ||||| || || || | ||||| ||| |||||
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077
Query 21666 CTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAt 21725
||||| | | ||| || | ||| || || || || || || || || |
Sbjct 217076 AGGCCCAGTCCGACTT---CTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020
Query 21726 ttttttCATCT-ACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784
|||| ||| ||| | || ||| ||||||||||||||
Sbjct 217019 CCCTTTC-TCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAATGA 216961
Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844
|| ||||| || || ||||| || ||||| ||||| | ||||||| |||||| ||
Sbjct 216960 ATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 216901
Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904
|| || | |||| || ||||| ||||| ||||| ||||||||||| || |||
Sbjct 216900 TGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGCC 216841
Query 21905 AATATATTTTTTATAAAATATC 21926
| | | | |||||| ||||
Sbjct 216840 AGAACGTGTGATATAAAGTATC 216819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531879896298560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |