Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3106 163 3e-35 >seq3106 Length=22756556 Score = 163 bits (180), Expect = 3e-35 Identities = 517/802 (64%), Gaps = 9/802 (1%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 ||||| |||||||| |||| |||| ||| || | ||||||| |||||| | Sbjct 217614 TAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCTC 217555 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| || | || || || || || || |||||||| ||||| | || ||| ||| Sbjct 217554 TGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCC 217495 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307 || || |||||||||||||| || ||| | || | | ||||| ||| | | Sbjct 217494 ATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGC 217435 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 || || || || || || || || || ||| | || || ||||| || |||| || Sbjct 217434 CTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTC 217375 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427 || || | || | || | || | || || |||||| | || || || | Sbjct 217374 ACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCTCC 217315 Query 21428 ATTATCCTAGATGTACTAGGGGGATA--CAATAATTGTTTAAACATCAAACATGCAAAAT 21485 | | ||| || || ||| || || | || || ||||||| || || || | Sbjct 217314 TTCACCCTC--TGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 |||| |||| || ||||| || || || | |||||| ||||| || | |||||||| | Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 ||| | || || | ||| || || |||||||| | || ||||| || ||||| || | Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 |||||||||| || || | ||||| || || || | ||||| ||| ||||| Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077 Query 21666 CTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAt 21725 ||||| | | ||| || | ||| || || || || || || || || | Sbjct 217076 AGGCCCAGTCCGACTT---CTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020 Query 21726 ttttttCATCT-ACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 |||| ||| ||| | || ||| |||||||||||||| Sbjct 217019 CCCTTTC-TCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAATGA 216961 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844 || ||||| || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 216960 ATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 216901 Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 || || | |||| || ||||| ||||| ||||| ||||||||||| || ||| Sbjct 216900 TGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGCC 216841 Query 21905 AATATATTTTTTATAAAATATC 21926 | | | | |||||| |||| Sbjct 216840 AGAACGTGTGATATAAAGTATC 216819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879896298560