Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 385 6e-102
seq3040 136 5e-27
seq3018 114 2e-20
seq3140 109 7e-19
>seq3106
Length=22756556
Score = 385 bits (426), Expect = 6e-102
Identities = 620/890 (70%), Gaps = 6/890 (1%)
Strand=Plus/Minus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
|||||||||||||| | || || || || || | || || || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117
|| | || ||||| |||||||| ||||| ||||| || | | ||| || |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177
|||| || || | || || || ||||| || || || ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237
||||| || || || || ||||| | ||| | || || || || || || || ||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297
|| | ||||| | || | | || ||| ||||| | || || |||
Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||| || ||||| || |||||||| ||||| ||||| || || ||||| ||||||||
Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
||||| |||||||| || || || || || ||||| || || || || || || ||||||
Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153
Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33474
|| ||||| ||||| || ||||||||||| | | | || |||||| || | ||
Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093
Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534
|| ||||| ||||| || | |||| || ||||| ||||| || || |||
Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCGATG 217036
Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594
||||| ||||| | | |||| | |||||| | |||||||||||| | |||||
Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976
Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654
|||||||| |||||||||||||| ||||| ||||| || ||||||||||| | ||||||
Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916
Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714
|| || || |||||| | || || ||| ||||||| ||||| ||||| || || |||
Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856
Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774
|| ||||| || |||| || ||| |||||| ||| | || || || | || | |
Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796
Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
|| | | || ||||| || | ||| || || || | |||||||| || ||||| ||
Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
|| |||||||| | ||| ||||||| |||| ||| ||||| || |||||
Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 136 bits (150), Expect = 5e-27
Identities = 113/138 (82%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395
||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892
Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||
Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832
Query 62456 ACTATTTCTAAGACCGTA 62473
||| ||||| | ||| ||
Sbjct 3956831 ACTGTTTCTTACACCATA 3956814
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || ||||| |||| |
Sbjct 3941771 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 3941712
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || |||||||||||||| || | ||| || ||| | | || || |||||||
Sbjct 3941711 CTGCTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 3941652
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 3941651 AGGCTCCAGGTAAATAGC 3941634
>seq3018
Length=3443724
Score = 114 bits (126), Expect = 2e-20
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||| | |||||||||||| | ||||| |||||||| |||||||||||||| |||||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669
||||| || ||||||||||| | |||||| || || || ||||||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || || || || || |||||||| ||||| ||||| || ||||||||||
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899
Query 33446 C 33446
|
Sbjct 3376900 C 3376900
>seq3140
Length=75551126
Score = 109 bits (120), Expect = 7e-19
Identities = 321/492 (65%), Gaps = 16/492 (3%)
Strand=Plus/Plus
Query 62030 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62089
|| ||| ||||| || || || | ||| || ||| || || |||||||| | ||
Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126
Query 62090 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62149
||| ||| | | || |||||||| |||| ||| || |||||||| ||||| |
Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186
Query 62150 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209
|| || || || |||| || | | || | || | |||||||| | | |||||
Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246
Query 62210 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCAT 62266
|| |||| | ||| || |||| | | ||| |||| | || ||| |||| ||
Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306
Query 62267 AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 62326
|||| ||| || || || ||||||||||| || ||| || | | | | | ||
Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365
Query 62327 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC---GAGTGTAAATATTACTGGT 62383
||||| || || ||| ||||||| ||||| ||||| | ||||||| || || |||||
Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425
Query 62384 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443
| | ||||| ||||| |||| | ||||| | ||| ||||| ||||| ||
Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476
Query 62444 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62503
|| | | |||| | |||| | || || || || || || || | | ||| |||
Sbjct 7457477 GGCAATAAGTAAATTGCTTCTTATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCA 7457536
Query 62504 ATTCCAAAGATC 62515
| ||| || ||
Sbjct 7457537 GTCCCACAGGTC 7457548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622922718175040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |