Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3040 87.8 5e-12 >seq3040 Length=4637412 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || |||| ||||| || || || |||| ||||| || || || || ||| Sbjct 3943161 GCTCAGCAACTTTGGTACGCCATTATCGAGTCTCAGACAGAGACGGGTACCCCGTACATG 3943220 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 3943221 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 3943280 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | ||||| ||| Sbjct 3943281 AGCAACCTGTGCACAGAAATAGTAGAATATACC 3943313 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || || |||||||||||||| | Sbjct 3941625 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATCTTTGAGTTTCTTGATTTA 3941684 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| || || ||||| || || |||||| | ||||| |||| ||| |||||| || Sbjct 3941685 AAGAAGAATACAGGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTCTTTGCCCTTTGGATT 3941744 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 3941745 CCAGATCTCTTCATGAAACGAGTGGAG 3941771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303301097658608