Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3063 91.5 1e-13 seq3105 89.7 4e-13 seq3082 86.0 5e-12 >seq3063 Length=7952490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| || ||||| | ||||| ||| || | ||| || Sbjct 5877500 AAGATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCC 5877559 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| | | | | ||||| || || ||||| ||||| | || |||| Sbjct 5877560 TCCAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5877619 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || || | || || || ||| | ||||||| || || | ||||| Sbjct 5877620 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTAC 5877679 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| ||||| ||| | ||| | ||||||||| | || || || Sbjct 5877680 AACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5877729 >seq3105 Length=21505965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || |||| |||||||| ||||| | || || || ||||| | | ||| || || || Sbjct 7417565 AAGATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCC 7417506 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | ||||| || || ||||| ||||| | || |||| Sbjct 7417505 CTGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7417446 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || || | ||| | | |||| | ||||||| || || | ||||| Sbjct 7417445 CAGCAAAGGCTGATCTTTGCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTAC 7417386 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGG 115509 ||||||||||| ||||| ||| | ||| | ||||||||| | || || Sbjct 7417385 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGG 7417339 >seq3082 Length=10725151 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || ||||| || || || || ||||| ||| | || |||| || Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||||| ||| | || || || || ||||| |||||| | || ||| Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGAC 1251125 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | ||||||| || | | || || Sbjct 1251126 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1251185 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || |||||||| ||| | || ||||| || | || |||| || Sbjct 1251186 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327701881280