Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 123 2e-23
seq3082 98.7 9e-16
seq3063 86.0 6e-12
>seq2965
Length=1497097
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | || ||||| || | || | ||| |||||||| || |||||||| ||
Sbjct 1203885 GCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1203826
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||||| ||| || ||||||||||| ||| |||| | | ||||||||| || ||
Sbjct 1203825 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1203766
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| || ||||| | ||| | || || ||| ||| |
Sbjct 1203765 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 1203706
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || || |||||||| ||||||||
Sbjct 1203705 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
||||| || | || | ||| |||||||| || |||||||| ||| | ||||||| |
Sbjct 1204100 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCG 1204041
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || ||||||||||| ||| |||| | | ||||||||| || ||||| || || |||
Sbjct 1204040 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1203981
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | ||| | || || ||| ||| | |||| ||| | |
Sbjct 1203980 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATG 1203921
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| || || || || || || ||||| |||||||||
Sbjct 1203920 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 1203885
>seq3082
Length=10725151
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| | || |||||||| | || | || ||||| || || |||||||| ||
Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| || || |||||||||||||| |||| | | ||||||||| |||||
Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| |||||||| || ||| || ||| | | ||| | || ||| ||| ||| |
Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251284
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || ||||| || ||||| ||||||||
Sbjct 1251283 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || ||| || || | || | || ||||| || || |||||||| ||
Sbjct 1251693 AGCCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAG 1251634
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || |||||||||||||| |||| | | ||||||||| ||||
Sbjct 1251633 AAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 1251574
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
| || |||||||| || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 1251573 GAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 1251514
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || ||||| ||||||||
Sbjct 1251513 CTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| | || |||||||| | || | || ||||| || || |||||||| ||
Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| || || |||||||||||||| |||| | | ||||||||| || ||
Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || ||| || ||| | | ||| | || ||| ||| ||| |
Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || ||||| ||||| || |||||
Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 1251009
>seq3063
Length=7952490
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | || ||| | ||| | || |||||| |||||||||||||||| |
Sbjct 5877729 CCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGAC 5877670
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||| || || || ||||| || | |||| | | ||||| || |||||
Sbjct 5877669 AAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGA 5877610
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || | ||| | || || ||| |
Sbjct 5877609 ATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACC 5877550
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
| || ||| | ||| | || || || ||||||||||||||||||||
Sbjct 5877549 TGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471994249896960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |