Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 104 2e-17
seq2965 93.3 3e-14
>seq3082
Length=10725151
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 1251464 CCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1251405
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | || |||| || ||||| ||| | ||||||| ||| ||||| |||
Sbjct 1251404 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGG 1251345
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||| ||||| || || || || |||||| | | | ||||||| |||||||
Sbjct 1251344 AATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCC 1251287
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || || ||||| || || || || ||||||||
Sbjct 1251286 ACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 102 bits (112), Expect = 7e-17
Identities = 164/234 (70%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 1251236 CCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1251177
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | || |||| || ||||| ||| | || |||| ||| ||||| ||
Sbjct 1251176 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGG 1251117
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||| || || || || || || |||||| | | | ||||||| |||||||
Sbjct 1251116 AATGCCTTCCTTATCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCC 1251059
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||||||| || || ||||| ||||| || || || |||||||||
Sbjct 1251058 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1251005
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || ||||| || || ||||||||||| | | || | ||
Sbjct 1251676 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251617
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| ||
Sbjct 1251616 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251557
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||| | ||||||| ||||| ||||||||
Sbjct 1251556 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGG 1251499
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || || || ||||||||
Sbjct 1251498 TCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
>seq2965
Length=1497097
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | || | ||| |||| ||||| ||||||||||| || |||||||||||||
Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| || | || |||| ||| ||||| ||
Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | ||||| | ||||||
Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTA 1203935
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || || || || || || || ||||||||
Sbjct 1203934 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| |
Sbjct 1203884 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1203825
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| || | || |||| ||| ||||| ||
Sbjct 1203824 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203765
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | ||||| | ||||||
Sbjct 1203764 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTA 1203707
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | ||||||||| || || || || || || || || |||||||||
Sbjct 1203706 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405072478040560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |