Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2216 127 1e-24 seq3141 98.7 7e-16 seq3132 96.9 2e-15 seq3133 95.1 8e-15 seq3136 91.5 1e-13 seq3105 91.5 1e-13 seq3061 91.5 1e-13 seq3110 87.8 1e-12 seq2997 87.8 1e-12 seq3124 86.0 4e-12 seq3082 86.0 4e-12 >seq2216 Length=34530 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2741 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2800 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2801 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2835 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 6289 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 6348 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 6349 GCCGGTATTTAGCCTTA 6365 >seq3141 Length=78381119 Score = 98.7 bits (108), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 9/95 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| || Sbjct 70966113 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 70966172 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | |||| |||||||||||||||||| |||| Sbjct 70966173 T----CATTCAAGCGCGTCACTAATTAGATAACGA 70966203 >seq3132 Length=50790421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||| || ||||||| | |||| || |||||| | Sbjct 14209544 AAGCCCGTTCCCTTGGCTGTGCTTTCCCTGGATAGTACACAGGGACAGTGGGAATCTCCT 14209603 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | ||| ||||||||||||||| |||||||||| Sbjct 14209604 TCGTCCATTCATGCGCGTCACTGATTAGATGAC 14209636 >seq3133 Length=50759066 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||| ||||||||||||||||||||||| | |||||||||| |||||||||||| | Sbjct 49301127 CTCTCTGCAAAGTTCTTTTCAACTTTCCCTTAGGGTACTTGTTGACTATCGGTCTCGTGC 49301186 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 49301187 TGGTATTTAGCCTTA 49301201 >seq3136 Length=61004451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/92 (83%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| | |||||| ||||| || ||| || | Sbjct 43006039 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTAGGGACAGTGGGAATTTCAT 43005980 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| | |||||||||||||||||||||| Sbjct 43005979 TCATCC-ATGATGCGCGTCACTAATTAGATGA 43005949 >seq3105 Length=21505965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||||||||||||| |||| | || Sbjct 7417350 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 7417409 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||| | | ||||| || || | ||| ||||| | || | ||||| || || Sbjct 7417410 TTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7417469 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATG--TAATA 38282 | || || ||| ||||| | | ||| || |||| ||| || | || Sbjct 7417470 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCA--GTCTCGTGGATGATG 7417527 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || |||||||| || || ||| |||| || Sbjct 7417528 GTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565 >seq3061 Length=7642621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || ||| | |||||||||| ||||||||||||| ||||||||||||||| | | | || Sbjct 2174630 CAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 2174571 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || ||||| || || | ||||||||| | || | ||||| || || Sbjct 2174570 TTCCA----GTTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 2174515 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | ||||| ||| | |||| | | | || || || Sbjct 2174514 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGT 2174455 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || |||| ||| | ||| |||||||| Sbjct 2174454 CTTTCCTGT-AAGGGTTTTATGAAAATCTGCAT 2174423 >seq3110 Length=25029222 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| || || || |||| || |||||| | Sbjct 7161189 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGACAG-AGGTAGGAACAGTGGGAATCTCCT 7161247 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| ||| ||||||||||||||||| || Sbjct 7161248 TTATCCATTCTTGCTCGTCACTAATTAGATGAAGA 7161282 >seq2997 Length=2481227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC-GT 38163 |||||| | |||||||||| |||||||||||| |||||| |||||||| || | | | Sbjct 411698 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAAT 411639 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| || || | ||| ||||| | || | ||||| || | Sbjct 411638 CTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTAT 411579 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 || || || ||| ||||| | ||||| || |||||| || | || | | Sbjct 411578 CCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTC-GAGGTGGTGG 411520 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||| | | |||||| | ||| ||||| || || Sbjct 411519 TCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411483 >seq3124 Length=37078832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 11450734 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGAGGATCGGTCTCCTGC 11450675 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 11450674 CTGTATTTAGCCTTA 11450660 >seq3082 Length=10725151 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||||| || |||||| ||| || || || ||||| ||||| Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | || Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || ||||||||||| | || || | || || Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || || || || |||| |||||||||||| || ||||| || Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934365660664