Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2216 127 1e-24
seq3141 98.7 7e-16
seq3132 96.9 2e-15
seq3133 95.1 8e-15
seq3136 91.5 1e-13
seq3105 91.5 1e-13
seq3061 91.5 1e-13
seq3110 87.8 1e-12
seq2997 87.8 1e-12
seq3124 86.0 4e-12
seq3082 86.0 4e-12
>seq2216
Length=34530
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 2741 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2800
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2801 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2835
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 6289 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 6348
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 6349 GCCGGTATTTAGCCTTA 6365
>seq3141
Length=78381119
Score = 98.7 bits (108), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 9/95 (9%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 70966113 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 70966172
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| | |||| |||||||||||||||||| ||||
Sbjct 70966173 T----CATTCAAGCGCGTCACTAATTAGATAACGA 70966203
>seq3132
Length=50790421
Score = 96.9 bits (106), Expect = 2e-15
Identities = 77/93 (83%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||| |||| || ||||||| | |||| || |||||| |
Sbjct 14209544 AAGCCCGTTCCCTTGGCTGTGCTTTCCCTGGATAGTACACAGGGACAGTGGGAATCTCCT 14209603
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| ||| ||||||||||||||| ||||||||||
Sbjct 14209604 TCGTCCATTCATGCGCGTCACTGATTAGATGAC 14209636
>seq3133
Length=50759066
Score = 95.1 bits (104), Expect = 8e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||||| ||||||||||||||||||||||| | |||||||||| |||||||||||| |
Sbjct 49301127 CTCTCTGCAAAGTTCTTTTCAACTTTCCCTTAGGGTACTTGTTGACTATCGGTCTCGTGC 49301186
Query 20009 TAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 49301187 TGGTATTTAGCCTTA 49301201
>seq3136
Length=61004451
Score = 91.5 bits (100), Expect = 1e-13
Identities = 76/92 (83%), Gaps = 6/92 (7%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||||| | |||||| ||||| || ||| || |
Sbjct 43006039 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTAGGGACAGTGGGAATTTCAT 43005980
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
| |||| | ||||||||||||||||||||||
Sbjct 43005979 TCATCC-ATGATGCGCGTCACTAATTAGATGA 43005949
>seq3105
Length=21505965
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||||||||||||| |||| | ||
Sbjct 7417350 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 7417409
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | |||| | | ||||| || || | ||| ||||| | || | ||||| || ||
Sbjct 7417410 TTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7417469
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATG--TAATA 38282
| || || ||| ||||| | | ||| || |||| ||| || | ||
Sbjct 7417470 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCA--GTCTCGTGGATGATG 7417527
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || || |||||||| || || ||| |||| ||
Sbjct 7417528 GTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565
>seq3061
Length=7642621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|| ||| | |||||||||| ||||||||||||| ||||||||||||||| | | | ||
Sbjct 2174630 CAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 2174571
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | || || ||||| || || | ||||||||| | || | ||||| || ||
Sbjct 2174570 TTCCA----GTTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 2174515
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | ||||| ||| | |||| | | | || || ||
Sbjct 2174514 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGT 2174455
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || |||| ||| | ||| ||||||||
Sbjct 2174454 CTTTCCTGT-AAGGGTTTTATGAAAATCTGCAT 2174423
>seq3110
Length=25029222
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/95 (81%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||| ||| || || || |||| || |||||| |
Sbjct 7161189 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGACAG-AGGTAGGAACAGTGGGAATCTCCT 7161247
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||| ||| ||||||||||||||||| ||
Sbjct 7161248 TTATCCATTCTTGCTCGTCACTAATTAGATGAAGA 7161282
>seq2997
Length=2481227
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC-GT 38163
|||||| | |||||||||| |||||||||||| |||||| |||||||| || | | |
Sbjct 411698 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAAT 411639
Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223
| || | ||| || || ||||| || || | ||| ||||| | || | ||||| || |
Sbjct 411638 CTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTAT 411579
Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283
|| || || ||| ||||| | ||||| || |||||| || | || | |
Sbjct 411578 CCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTC-GAGGTGGTGG 411520
Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || ||| | | |||||| | ||| ||||| || ||
Sbjct 411519 TCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411483
>seq3124
Length=37078832
Score = 86.0 bits (94), Expect = 4e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 11450734 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGAGGATCGGTCTCCTGC 11450675
Query 20009 TAATATTTAGCCTTA 20023
||||||||||||
Sbjct 11450674 CTGTATTTAGCCTTA 11450660
>seq3082
Length=10725151
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| |||| ||||| || |||||| ||| || || || ||||| |||||
Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || || ||||| || || | || || || | ||
Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| || ||| || || ||||||||||| | || || | || ||
Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || || || || || |||| |||||||||||| || ||||| ||
Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334934365660664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |