Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3106 356 3e-93 seq3040 136 5e-27 seq3140 113 6e-20 seq3018 96.9 4e-15 >seq3106 Length=22756556 Score = 356 bits (394), Expect = 3e-93 Identities = 616/892 (69%), Gaps = 10/892 (1%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 |||||||||||||| | || || || || || | || || || || || || || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||| || ||||| |||||||| || |||||||| || | | ||| || ||| Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || || | || || || || || || || || ||||| | || || Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || ||||| | ||| | || || || || || || || ||| Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAA 32652 |||| ||||| || | | ||| | || ||| || || | || || | Sbjct 217332 GCGTTGACGATAATC--TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA 217275 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| || ||||| || ||||| || ||||| ||||| || || | ||| ||||||| Sbjct 217274 ACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAA 217215 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | ||||| |||||||| || || || || || ||||| || || |||||||| || |||| Sbjct 217214 AGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAG 217155 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 32829 |||| || || ||||| || || |||||||| | | | || |||||| ||| Sbjct 217154 AAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTT 217095 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 |||| ||||| ||||| || | |||||| ||||| ||||| ||||| | Sbjct 217094 TGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGA 217038 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | ||||| ||||| | | |||| | |||||| | ||| ||||| || | |||| Sbjct 217037 TGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGAC 216978 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | |||||||| |||||||||||||| ||||| || || || |||||||| || | ||||| Sbjct 216977 TGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCT 216918 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | || || || |||||| | || || || | ||||| ||||| ||||| || || | Sbjct 216917 CTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGC 216858 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 |||| ||||| || |||| || ||| |||||| ||| | || || || | || | Sbjct 216857 TGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTT 216798 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| | | || ||||| || | |||||| || || | |||||||| || ||||| | Sbjct 216797 CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGG 216738 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | || |||||||| | ||| |||||||| |||| || || || || ||||| Sbjct 216737 CTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 136 bits (150), Expect = 5e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832 Query 62311 ACTATTTCTAAGACCGTA 62328 ||| ||||| | ||| || Sbjct 3956831 ACTGTTTCTTACACCATA 3956814 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 3941771 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 3941712 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||||||||| || | ||| || ||| | | || || ||||||| Sbjct 3941711 CTGCTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 3941652 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 3941651 AGGCTCCAGGTAAATAGC 3941634 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || | || Sbjct 3931312 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCCGCCAAAA 3931253 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 3931252 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 3931193 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 3931192 GTTCCACTGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 3931147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || |||||||| ||||||||||| | ||||| || |||||| Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | ||||| || || |||||||| || | || | ||| ||| Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094 Query 63587 ATGTGCTGAGGTCTTTCA 63604 || || || ||||||||| Sbjct 3936093 ATATGTTGCGGTCTTTCA 3936076 >seq3140 Length=75551126 Score = 113 bits (124), Expect = 6e-20 Identities = 322/492 (65%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 61885 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 61944 || ||| ||||| || || || | ||| || ||| || || |||||||| | || Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126 Query 61945 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62004 ||| ||| | | || |||||||| |||| ||| || |||||||| ||||| | Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186 Query 62005 TCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 || || || || |||| || | || || | || | |||||||| | | ||||| Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246 Query 62065 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCAT 62121 || |||| | ||| || |||| | | ||| |||| | || ||| |||| || Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306 Query 62122 AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 62181 |||| ||| || || || ||||||||||| || ||| || | | | | | || Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365 Query 62182 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC---GAGTGTAAATATTACTGGT 62238 ||||| || || ||| ||||||| ||||| ||||| | ||||||| || || ||||| Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425 Query 62239 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298 | | ||||| ||||| |||| | ||||| | ||| ||||| ||||| || Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476 Query 62299 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62358 || | | |||| | |||| | || || || || || || || | | ||| ||| Sbjct 7457477 GGCAATAAGTAAATTGCTTCTTATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCA 7457536 Query 62359 ATTCCAAAGATC 62370 | ||| || || Sbjct 7457537 GTCCCACAGGTC 7457548 >seq3018 Length=3443724 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| ||||| Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || || || |||||||| || | |||||| || || || |||||| Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633607098262400