Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3106 235 6e-57 seq3018 82.4 9e-11 >seq3106 Length=22756556 Score = 235 bits (260), Expect = 6e-57 Identities = 424/614 (69%), Gaps = 7/614 (1%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATT 93138 ||| |||| | ||| || ||||| || | || || |||| || | || | ||||| Sbjct 217278 TTGAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTC-TGCTGATGAGTTCATT 217220 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | || || | || || | ||||| |||||||| ||||| || || || |||||| Sbjct 217219 GGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGA 217160 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 |||||||||||| || ||||||||||| ||||| || || | ||||| || || | || Sbjct 217159 ACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGC 217100 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||||| || ||||| || | || ||| | ||| || | || Sbjct 217099 CTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGT 217043 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||||| || || || ||| | || | || |||||| || || |||||||| | Sbjct 217042 CTCGATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| |||||||||||||| | || ||||| || || ||||| ||||||||||| | Sbjct 216982 GAGACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCG 216923 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||| || ||||| || |||||||| || | ||| || | ||| ||||||||||| || Sbjct 216922 AGCCTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCC 216863 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||| || ||||| ||||||| | || |||||| | | |||| || || || Sbjct 216862 ATCGCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAG 216803 Query 93559 CTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 ||||| | | || | ||||| |||||||| || || || | |||||||| || | Sbjct 216802 GGCTTCCCAGTGCTGA-ATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGG 216744 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 | || ||||| || ||||| | ||| ||||| || |||| || || || |||||||| | Sbjct 216743 CCTCGGCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAAGC 216684 Query 93678 GATTAGGGTTATCT 93691 | ||||| ||| Sbjct 216683 GCCGGGGGTTCTCT 216670 >seq3018 Length=3443724 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| || || |||||||| | ||| |||||||| ||||| | || ||||| Sbjct 3378002 GAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATG 3378061 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || ||||| ||||||||||| | ||| || ||||| || |||||||| Sbjct 3378062 GCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCTTG 3378111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838915370560