Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3135 113 4e-20
seq3126 95.1 1e-14
seq2965 93.3 4e-14
>seq3135
Length=60673567
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || || || || ||| || || || |||| ||||| || || |||
Sbjct 60530221 AGATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCA 60530280
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
||| ||| || || ||||| ||||| ||||||||||| || || |||||||| |
Sbjct 60530281 GCGACACCAGTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACC 60530340
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| | | || ||||||||||||||||| | ||||| || || |||| || ||||
Sbjct 60530341 AGCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACA 60530400
Query 22397 ACATTCAAAAAGAATCC 22413
||||||| ||||| |||
Sbjct 60530401 ACATTCAGAAAGAGTCC 60530417
>seq3126
Length=40167016
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354
||||| ||||| |||||||||||| | || ||||| || || || | || ||||| |
Sbjct 36688910 TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAGCAGTGCCTGATATTCG 36688851
Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414
|| |||||||| | |||||| | || |||| || |||||||| |||||||| ||||
Sbjct 36688850 CCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAACATCCAAAAAGAGTCCA 36688791
Query 22415 CCATACA 22421
|| ||||
Sbjct 36688790 CCCTACA 36688784
>seq2965
Length=1497097
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| || || || || |||
Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||||||||| || || || || ||
Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || || || ||||| ||| | || || |||||| ||||||| ||||||
Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449
|| || || || |||||| | || | || |||| || | |||||| ||
Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGGTGTT 1204116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| || || || || |||
Sbjct 1203658 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203717
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || || |||||||||||||| || || || || ||
Sbjct 1203718 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203777
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || || || ||||| ||| | || || |||||| |||| || ||||||
Sbjct 1203778 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAAC 1203837
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1203838 ATCCAGAAGGAGTCCACC 1203855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419711917072360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |