Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3135 113 4e-20 seq3126 95.1 1e-14 seq2965 93.3 4e-14 >seq3135 Length=60673567 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || ||| || || || |||| ||||| || || ||| Sbjct 60530221 AGATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCA 60530280 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| ||| || || ||||| ||||| ||||||||||| || || |||||||| | Sbjct 60530281 GCGACACCAGTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACC 60530340 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | | | || ||||||||||||||||| | ||||| || || |||| || |||| Sbjct 60530341 AGCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACA 60530400 Query 22397 ACATTCAAAAAGAATCC 22413 ||||||| ||||| ||| Sbjct 60530401 ACATTCAGAAAGAGTCC 60530417 >seq3126 Length=40167016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| |||||||||||| | || ||||| || || || | || ||||| | Sbjct 36688910 TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAGCAGTGCCTGATATTCG 36688851 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 || |||||||| | |||||| | || |||| || |||||||| |||||||| |||| Sbjct 36688850 CCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAACATCCAAAAAGAGTCCA 36688791 Query 22415 CCATACA 22421 || |||| Sbjct 36688790 CCCTACA 36688784 >seq2965 Length=1497097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || || |||||| ||||||| |||||| Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || || |||||| | || | || |||| || | |||||| || Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGGTGTT 1204116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| Sbjct 1203658 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203717 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 1203718 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203777 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || || |||||| |||| || |||||| Sbjct 1203778 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAAC 1203837 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1203838 ATCCAGAAGGAGTCCACC 1203855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711917072360