Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3139 95.1 2e-14 seq3087 95.1 2e-14 seq3143 91.5 3e-13 seq3108 91.5 3e-13 seq3141 89.7 1e-12 seq3122 89.7 1e-12 seq3105 89.7 1e-12 seq3125 87.8 4e-12 seq3123 87.8 4e-12 seq2947 87.8 4e-12 seq2843 87.8 4e-12 seq2852 84.2 4e-11 >seq3139 Length=61496919 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 23152160 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23152101 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 23152100 CCCACGTTGGGCGGAAG 23152084 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 23163302 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 23163361 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 23163362 GCCCCACGTTGGGC 23163375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 23172159 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23172218 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 23172219 CCCACGTTGGGC 23172230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | Sbjct 23159563 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGT 23159504 Query 142571 CGGGCAGA 142578 ||||||| Sbjct 23159503 TGGGCAGA 23159496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||||| Sbjct 23161356 GCCCGGCTAGCTCAGTCGGTAGGGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23161415 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 23161416 CCCACGTTGGGC 23161427 >seq3087 Length=11989055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 8692204 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 8692145 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 8692144 TCCCGGCAGAGA 8692133 >seq3143 Length=88675666 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct 57908666 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTG 57908725 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 57908726 CCCCACATTGGGC 57908738 >seq3108 Length=23989115 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 ||||| | |||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 11129194 GTGAGCT-GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 11129136 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||||||||| | |||| Sbjct 11129135 GTTCGAGCCCCACGTTGGGC 11129116 >seq3141 Length=78381119 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 46431638 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 46431697 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 46431698 CCCACGTTGGGC 46431709 >seq3122 Length=33939536 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 33807935 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 33807994 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 33807995 CCCACGTTGGGC 33808006 >seq3105 Length=21505965 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 21201152 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 21201093 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 21201092 CCCACGTTGGGC 21201081 >seq3125 Length=39996202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| ||| ||||||||||| Sbjct 447824 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 447883 Query 142563 CCCCAC 142568 |||||| Sbjct 447884 CCCCAC 447889 >seq3123 Length=34170112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2269275 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 2269334 Query 142563 CCCCACATCGGGCAGAAG 142580 |||||| | |||| |||| Sbjct 2269335 CCCCACGTTGGGCGGAAG 2269352 >seq2947 Length=1099660 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 761561 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAG 761620 Query 142563 CCCCAC 142568 |||||| Sbjct 761621 CCCCAC 761626 >seq2843 Length=601652 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 431694 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAG 431635 Query 142563 CCCCAC 142568 |||||| Sbjct 431634 CCCCAC 431629 >seq2852 Length=511662 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| Sbjct 299800 AGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 299741 Query 142563 CCCCAC 142568 |||||| Sbjct 299740 CCCCAC 299735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795396164104