Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3139 95.1 2e-14
seq3087 95.1 2e-14
seq3143 91.5 3e-13
seq3108 91.5 3e-13
seq3141 89.7 1e-12
seq3122 89.7 1e-12
seq3105 89.7 1e-12
seq3125 87.8 4e-12
seq3123 87.8 4e-12
seq2947 87.8 4e-12
seq2843 87.8 4e-12
seq2852 84.2 4e-11
>seq3139
Length=61496919
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 23152160 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23152101
Query 142564 CCCACATCGGGCAGAAG 142580
||||| | |||| ||||
Sbjct 23152100 CCCACGTTGGGCGGAAG 23152084
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 23163302 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 23163361
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 23163362 GCCCCACGTTGGGC 23163375
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 23172159 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23172218
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 23172219 CCCACGTTGGGC 23172230
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 23159563 TAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGT 23159504
Query 142571 CGGGCAGA 142578
|||||||
Sbjct 23159503 TGGGCAGA 23159496
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 23161356 GCCCGGCTAGCTCAGTCGGTAGGGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23161415
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 23161416 CCCACGTTGGGC 23161427
>seq3087
Length=11989055
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 8692204 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 8692145
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 8692144 TCCCGGCAGAGA 8692133
>seq3143
Length=88675666
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 57908666 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTG 57908725
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 57908726 CCCCACATTGGGC 57908738
>seq3108
Length=23989115
Score = 91.5 bits (100), Expect = 3e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555
||||| | |||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 11129194 GTGAGCT-GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 11129136
Query 142556 GTTCGAGCCCCACATCGGGC 142575
||||||||||||| | ||||
Sbjct 11129135 GTTCGAGCCCCACGTTGGGC 11129116
>seq3141
Length=78381119
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 46431638 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 46431697
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 46431698 CCCACGTTGGGC 46431709
>seq3122
Length=33939536
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 33807935 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 33807994
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 33807995 CCCACGTTGGGC 33808006
>seq3105
Length=21505965
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 21201152 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 21201093
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 21201092 CCCACGTTGGGC 21201081
>seq3125
Length=39996202
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| | ||||||||||||| ||| |||||||||||
Sbjct 447824 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 447883
Query 142563 CCCCAC 142568
||||||
Sbjct 447884 CCCCAC 447889
>seq3123
Length=34170112
Score = 87.8 bits (96), Expect = 4e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2269275 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 2269334
Query 142563 CCCCACATCGGGCAGAAG 142580
|||||| | |||| ||||
Sbjct 2269335 CCCCACGTTGGGCGGAAG 2269352
>seq2947
Length=1099660
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 761561 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAG 761620
Query 142563 CCCCAC 142568
||||||
Sbjct 761621 CCCCAC 761626
>seq2843
Length=601652
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 431694 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAG 431635
Query 142563 CCCCAC 142568
||||||
Sbjct 431634 CCCCAC 431629
>seq2852
Length=511662
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 299800 AGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 299741
Query 142563 CCCCAC 142568
||||||
Sbjct 299740 CCCCAC 299735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027795396164104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |