Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2965 188 1e-42 seq3082 179 7e-40 seq3126 145 1e-29 seq3135 140 6e-28 seq3071 95.1 2e-14 seq3141 84.2 4e-11 >seq2965 Length=1497097 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||| | |||||| || ||||| || || || || ||||| || || Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| ||| |||||||| | ||||| Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1203933 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 1203932 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || || ||||| || | | Sbjct 1203875 AGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 1203816 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || ||||| || || || || ||||| || || ||||| ||| Sbjct 1203815 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1203756 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | ||||| || | |||| Sbjct 1203755 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTG 1203696 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||||| ||||| ||||||||| Sbjct 1203695 ATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657 >seq3082 Length=10725151 Score = 179 bits (198), Expect = 7e-40 Identities = 175/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 1251226 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251167 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| ||||||||||||||| Sbjct 1251166 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCC 1251107 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||| |||||||| |||| || || |||||||| Sbjct 1251106 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAAGGT 1251048 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || ||||| || ||||| || |||||| || Sbjct 1251047 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1251005 Score = 158 bits (174), Expect = 2e-33 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 1251454 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251395 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || ||||||||||| Sbjct 1251394 CCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1251335 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||| |||||||| ||| | || || |||| || Sbjct 1251334 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGAGT 1251276 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || || ||||| ||||| |||||||| Sbjct 1251275 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | |||||||| Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1251554 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| |||||||| | || ||||||| ||||||||| || Sbjct 1251553 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 1251494 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| |||||||| Sbjct 1251493 CCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 >seq3126 Length=40167016 Score = 145 bits (160), Expect = 1e-29 Identities = 168/227 (74%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || |||| || ||||| |||||| |||||||||||||||||||| || || ||| Sbjct 36688760 CCACCTCGCAGGCACAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAG 36688819 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | ||| || | ||||||||| || | || || || ||||| Sbjct 36688820 AGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGG 36688879 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||| ||||||||||| || || | ||||| ||||||| | || || Sbjct 36688880 ATGCTCTCCTTGTCTTGGATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACC 36688932 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || |||| || ||||| |||||||| ||||| |||||||| Sbjct 36688933 TCGAGGATGGTGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979 >seq3135 Length=60673567 Score = 140 bits (154), Expect = 6e-28 Identities = 157/206 (76%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 || |||| | ||||||||| || ||||| || || ||||| |||| || || || | || Sbjct 60530426 AGGGTAGTG-GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCT 60530368 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 | || ||||| |||| || | ||||||||||| ||||||||||||||||| || | Sbjct 60530367 GTTTGCCGGCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTT 60530308 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCC 68435 | || ||||| ||| ||||||| |||| || || || | ||||||||| || ||| Sbjct 60530307 TGGCTTTGACATTCTCACTGGTGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCC 60530249 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| |||||||||||||| Sbjct 60530248 CTTAGGGTCTTCACGAATATCTGCAT 60530223 >seq3071 Length=8717935 Score = 95.1 bits (104), Expect = 2e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 |||||||||||||| || || || ||||| |||||||||||| |||| || || || Sbjct 8139941 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGGCTCAACCTC 8139883 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||| || || || |||||||| ||||||||||||||| Sbjct 8139882 AAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAATATCTGCATT 8139837 >seq3141 Length=78381119 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||| ||||| || ||||||| || ||||||||||||| Sbjct 46431635 AGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 46431694 Query 84513 AGCCCCACATCGGGCAGGT 84531 |||||||| | |||| ||| Sbjct 46431695 AGCCCCACGTTGGGCGGGT 46431713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921586180239680