Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 188 1e-42
seq3082 179 7e-40
seq3126 145 1e-29
seq3135 140 6e-28
seq3071 95.1 2e-14
seq3141 84.2 4e-11
>seq2965
Length=1497097
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | ||||||| |||| ||| || |||||||| || |||||||| || ||||||
Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| ||||| | |||||| || ||||| || || || || ||||| || ||
Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| |||||||| ||| |||||||| | |||||
Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1203933
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||| ||||| ||||||||
Sbjct 1203932 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
Score = 183 bits (202), Expect = 6e-41
Identities = 172/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| |||| ||| || |||||||| || |||||||| || || ||||| || | |
Sbjct 1203875 AGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 1203816
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|| ||||| | |||||| || ||||| || || || || ||||| || || ||||| |||
Sbjct 1203815 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1203756
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| |||||||| ||| |||||||| | ||||| || | ||||
Sbjct 1203755 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTG 1203696
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || || ||||||||||| ||||| |||||||||
Sbjct 1203695 ATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657
>seq3082
Length=10725151
Score = 179 bits (198), Expect = 7e-40
Identities = 175/223 (78%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| |||| ||| || ||||||||||| |||||||| || || || || || |
Sbjct 1251226 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251167
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || ||||| || || ||||| |||||||||||||||
Sbjct 1251166 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCC 1251107
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422
|| || || ||||| ||||| || ||| |||||||| |||| || || ||||||||
Sbjct 1251106 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAAGGT 1251048
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||||| || || || ||||| || ||||| || |||||| ||
Sbjct 1251047 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1251005
Score = 158 bits (174), Expect = 2e-33
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| |||| ||| || ||||||||||| |||||||| || || || || || |
Sbjct 1251454 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251395
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || ||||| || |||||||||||
Sbjct 1251394 CCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1251335
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
|| || || ||||| ||||| || ||| |||||||| ||| | || || |||| ||
Sbjct 1251334 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGAGT 1251276
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 1251275 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 156 bits (172), Expect = 8e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| || || || || || | ||||||||
Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || ||||| || || ||||| || ||||||||||| || || ||
Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1251554
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| || ||| |||||||| | || ||||||| ||||||||| ||
Sbjct 1251553 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 1251494
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||| ||||| ||||||||
Sbjct 1251493 CCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
>seq3126
Length=40167016
Score = 145 bits (160), Expect = 1e-29
Identities = 168/227 (74%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || |||| || ||||| |||||| |||||||||||||||||||| || || |||
Sbjct 36688760 CCACCTCGCAGGCACAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAG 36688819
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| |||| ||||| || | ||| || | ||||||||| || | || || || |||||
Sbjct 36688820 AGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGG 36688879
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||| ||||||||||| || || | ||||| ||||||| | || ||
Sbjct 36688880 ATGCTCTCCTTGTCTTGGATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACC 36688932
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | | || |||| || ||||| |||||||| ||||| ||||||||
Sbjct 36688933 TCGAGGATGGTGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979
>seq3135
Length=60673567
Score = 140 bits (154), Expect = 6e-28
Identities = 157/206 (76%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316
|| |||| | ||||||||| || ||||| || || ||||| |||| || || || | ||
Sbjct 60530426 AGGGTAGTG-GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCT 60530368
Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376
| || ||||| |||| || | ||||||||||| ||||||||||||||||| || |
Sbjct 60530367 GTTTGCCGGCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTT 60530308
Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCC 68435
| || ||||| ||| ||||||| |||| || || || | ||||||||| || |||
Sbjct 60530307 TGGCTTTGACATTCTCACTGGTGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCC 60530249
Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| ||||||||||||||
Sbjct 60530248 CTTAGGGTCTTCACGAATATCTGCAT 60530223
>seq3071
Length=8717935
Score = 95.1 bits (104), Expect = 2e-14
Identities = 86/106 (81%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416
|||||||||||||| || || || ||||| |||||||||||| |||| || || ||
Sbjct 8139941 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGGCTCAACCTC 8139883
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| ||||||||| || || || |||||||| |||||||||||||||
Sbjct 8139882 AAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAATATCTGCATT 8139837
>seq3141
Length=78381119
Score = 84.2 bits (92), Expect = 4e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512
||||||||| |||||||||||| ||||| || ||||||| || |||||||||||||
Sbjct 46431635 AGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 46431694
Query 84513 AGCCCCACATCGGGCAGGT 84531
|||||||| | |||| |||
Sbjct 46431695 AGCCCCACGTTGGGCGGGT 46431713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921586180239680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |