Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3106 279 1e-69 seq3143 123 5e-23 seq3018 96.9 7e-15 >seq3106 Length=22756556 Score = 279 bits (308), Expect = 1e-69 Identities = 595/875 (68%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| ||||| ||| ||||| ||||| || || |||| ||||| || Sbjct 216701 ATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCA 216760 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | || || |||| |||| | || |||||| | ||| | ||| | Sbjct 216761 GAGGAGGTGGATCTTTCCAAAGACATTCAGCA--CTGGGAAGCCCTGAAGCCCGAGGAGA 216818 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | ||| | ||| | | | ||||| ||||| |||||| || ||||||||||||| Sbjct 216819 GATACTTTATA-TCACA--CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATG 216875 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 |||| ||| |||||| |||| || || | ||||| ||||| ||||||| Sbjct 216876 AGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACG 216935 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---A 42576 |||||||||| ||||| || ||| | || ||||| ||||| | || |||| | | Sbjct 216936 GCTTCCAGATCGCCATGGAAAACATTCATTCTGAAATGTAC---AGTCTCCTCATCGATA 216992 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGATG 42632 | || ||| ||| || || | || || || ||||| ||||| ||||| ||| Sbjct 216993 CTTATATCAAAGATTCC----AGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATG 217048 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||| |||||||||| | |||||| | | || || || Sbjct 217049 CCCTGTGT---GAAGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACT 217105 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | || || | ||||||||||| | ||||| || |||||||| || || || | || Sbjct 217106 TATGGGGAACGCGTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTT 217165 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811 || || ||||||||||| ||| | | || | | |||||||| |||||||| || || || Sbjct 217166 GCGTCGATCTTCTGGCTGAAG-AAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGA 217224 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||||||||| || ||||| ||||| | ||||| |||||||| ||||| | || Sbjct 217225 ACTCATCAGCAGAGATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTC---AAGCA 217281 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 ||| | ||| | ||||| || || |||| || || ||| | ||||| || Sbjct 217282 CCTGATGCATAGACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAAT 217341 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991 |||| |||||||||||||| || | |||| ||| ||| | ||||||||| ||| || Sbjct 217342 CGAGCAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCT 217401 Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC-C 43050 |||| |||||||| ||| ||| || ||| ||| || || |||| | || Sbjct 217402 CATGAAGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAA 217461 Query 43051 GCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA 43110 | | | ||| | || || ||||| |||||||| || || | || || |||| Sbjct 217462 GGTTTTTCAA-GTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGA 217520 Query 43111 CCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||| || |||||| | || | ||| || ||| Sbjct 217521 CAAACTTCTTTGAGAAGAGGGTAGGCGAGTATCAG 217555 >seq3143 Length=88675666 Score = 123 bits (136), Expect = 5e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | ||||| |||||| | ||||||||||| |||| || Sbjct 4807013 GGGGAGAGAGTGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCG 4807072 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | ||||||||||| ||| ||| ||| || ||||||| ||||||||||| ||||| || Sbjct 4807073 GCTATCTTCTGGCTGAAGAAGAGAGGCCTC-CTGCCCGGCCTCACCTTCTCCAACGAGCT 4807131 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||||||||||| Sbjct 4807132 CATCAGCAGGGACGAGG 4807148 >seq3018 Length=3443724 Score = 96.9 bits (106), Expect = 7e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || |||||||| || || || | || || || ||||||| Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846 Query 42766 GGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | || | | |||||||| |||||||| || || |||||||||||||| Sbjct 3376845 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3376787 Query 42825 GACGAGG 42831 || |||| Sbjct 3376786 GATGAGG 3376780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944302087469440