Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 279 1e-69
seq3143 123 5e-23
seq3018 96.9 7e-15
>seq3106
Length=22756556
Score = 279 bits (308), Expect = 1e-69
Identities = 595/875 (68%), Gaps = 34/875 (4%)
Strand=Plus/Plus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||||| |||| ||||| ||| ||||| ||||| || || |||| ||||| ||
Sbjct 216701 ATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCA 216760
Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399
|||||| | || || |||| |||| | || |||||| | ||| | ||| |
Sbjct 216761 GAGGAGGTGGATCTTTCCAAAGACATTCAGCA--CTGGGAAGCCCTGAAGCCCGAGGAGA 216818
Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459
| | ||| | ||| | | | ||||| ||||| |||||| || |||||||||||||
Sbjct 216819 GATACTTTATA-TCACA--CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATG 216875
Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519
|||| ||| |||||| |||| || || | ||||| ||||| |||||||
Sbjct 216876 AGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACG 216935
Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---A 42576
|||||||||| ||||| || ||| | || ||||| ||||| | || |||| | |
Sbjct 216936 GCTTCCAGATCGCCATGGAAAACATTCATTCTGAAATGTAC---AGTCTCCTCATCGATA 216992
Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGATG 42632
| || ||| ||| || || | || || || ||||| ||||| ||||| |||
Sbjct 216993 CTTATATCAAAGATTCC----AGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATG 217048
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||| | ||||||| |||||||||| | |||||| | | || || ||
Sbjct 217049 CCCTGTGT---GAAGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACT 217105
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
| || || | ||||||||||| | ||||| || |||||||| || || || | ||
Sbjct 217106 TATGGGGAACGCGTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTT 217165
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811
|| || ||||||||||| ||| | | || | | |||||||| |||||||| || || ||
Sbjct 217166 GCGTCGATCTTCTGGCTGAAG-AAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGA 217224
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||||||||| || ||||| ||||| | ||||| |||||||| ||||| | ||
Sbjct 217225 ACTCATCAGCAGAGATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTC---AAGCA 217281
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
||| | ||| | ||||| || || |||| || || ||| | ||||| ||
Sbjct 217282 CCTGATGCATAGACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAAT 217341
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991
|||| |||||||||||||| || | |||| ||| ||| | ||||||||| ||| ||
Sbjct 217342 CGAGCAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCT 217401
Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC-C 43050
|||| |||||||| ||| ||| || ||| ||| || || |||| | ||
Sbjct 217402 CATGAAGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAA 217461
Query 43051 GCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA 43110
| | | ||| | || || ||||| |||||||| || || | || || ||||
Sbjct 217462 GGTTTTTCAA-GTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGA 217520
Query 43111 CCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
| ||||| || |||||| | || | ||| || |||
Sbjct 217521 CAAACTTCTTTGAGAAGAGGGTAGGCGAGTATCAG 217555
>seq3143
Length=88675666
Score = 123 bits (136), Expect = 5e-23
Identities = 111/137 (81%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| ||||| | ||||| |||||| | ||||||||||| |||| ||
Sbjct 4807013 GGGGAGAGAGTGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCG 4807072
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| ||||||||||| ||| ||| ||| || ||||||| ||||||||||| ||||| ||
Sbjct 4807073 GCTATCTTCTGGCTGAAGAAGAGAGGCCTC-CTGCCCGGCCTCACCTTCTCCAACGAGCT 4807131
Query 42815 CATCAGCAGGGACGAGG 42831
|||||||||||||||||
Sbjct 4807132 CATCAGCAGGGACGAGG 4807148
>seq3018
Length=3443724
Score = 96.9 bits (106), Expect = 7e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
||||||||||| | || || || |||||||| || || || | || || || |||||||
Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846
Query 42766 GGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| | | || | | |||||||| |||||||| || || ||||||||||||||
Sbjct 3376845 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3376787
Query 42825 GACGAGG 42831
|| ||||
Sbjct 3376786 GATGAGG 3376780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944302087469440
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