Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 129 1e-24
seq2965 120 7e-22
seq3061 98.7 2e-15
seq3135 96.9 8e-15
seq3105 95.1 3e-14
seq3071 86.0 1e-11
seq2997 84.2 5e-11
>seq3082
Length=10725151
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 1251427 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1251368
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||||||||||||||| || || ||||| ||
Sbjct 1251367 ATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1251308
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || || ||||| ||||| || ||||||||||| |||
Sbjct 1251307 TCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 1251248
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1251247 AAGATCTGCAT 1251237
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 1251655 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1251596
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||||||||||||||| || || ||||| ||
Sbjct 1251595 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1251536
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || ||||| || ||||| ||||| || ||||| ||||| |||
Sbjct 1251535 TCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACG 1251476
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1251475 AAGATCTGCAT 1251465
Score = 113 bits (124), Expect = 1e-19
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 1251199 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1251140
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||| || ||||| ||||||||||| || || ||||| ||
Sbjct 1251139 ATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 1251080
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || | ||||| ||||| || ||||| || || |||
Sbjct 1251079 TCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACG 1251020
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 1251019 AAGATTTGCATTTTG 1251005
>seq2965
Length=1497097
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| ||||| |||||||| | || || || ||||||
Sbjct 1204076 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 1204017
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || | ||||| || || || || ||||| || || || || ||
Sbjct 1204016 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 1203957
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | ||||| ||||| ||||| ||||| || || || ||||| |||
Sbjct 1203956 TCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 1203897
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1203896 AAGATCTGCAT 1203886
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||| ||||| |||||||| | || || || ||||||
Sbjct 1203848 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 1203789
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || | ||||| || || || || ||||| || || || || ||
Sbjct 1203788 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 1203729
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | ||||| ||||| ||||| ||||| || || || ||||| |||
Sbjct 1203728 TCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACG 1203669
Query 288463 AATATCTGCATT 288474
|| |||||||||
Sbjct 1203668 AAGATCTGCATT 1203657
>seq3061
Length=7642621
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||| ||| || || ||||||| ||| | || ||||| || || || || |
Sbjct 2174644 CCACCATGGAATCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGAC 2174585
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||| ||| ||||| | || || || |||||||| | |||||| | ||
Sbjct 2174584 AAAGTGCATCCATCTTCCAGTTA----CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGA 2174529
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || ||||||| || || | ||| |
Sbjct 2174528 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCC 2174469
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||| ||||| ||||| || || || || || | ||| ||||||||
Sbjct 2174468 TTGAGGGTGATGGTCTTTCCTGTAAGGGT-TTTATGAAAATCTGCAT 2174423
>seq3135
Length=60673567
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| || || || ||||| | ||| || || ||||| || | ||||| || || ||
Sbjct 60530413 TCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAAT 60530354
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| || | || |||||| ||||| || || |||||||| ||||| || ||
Sbjct 60530353 ACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTC 60530294
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| | | ||||| | || || || || ||||| ||||| || | || ||||| |||
Sbjct 60530293 TCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTCACG 60530234
Query 288463 AATATCTGCAT 288473
|||||||||||
Sbjct 60530233 AATATCTGCAT 60530223
>seq3105
Length=21505965
Score = 95.1 bits (104), Expect = 3e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308
||| |||||||| | || ||||||| ||| || ||||| || || || || | |
Sbjct 7417338 ACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAA 7417397
Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368
|| ||||| ||||| | |||| | | || |||||||| | || ||| | || ||
Sbjct 7417398 AGTACGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAAT 7417457
Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428
|||||| ||||||||||| || || || || |||||||||| || | ||| ||
Sbjct 7417458 TCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTC 7417517
Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| | |||| |||||||| || | || || || || ||| ||||
Sbjct 7417518 GTGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7417562
>seq3071
Length=8717935
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || || |||||||| ||||| || || || || | ||||| | || || ||
Sbjct 8139941 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCA 8139882
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| || ||||| ||||| |||||||||||||||
Sbjct 8139881 AGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAATATCTGCATT 8139837
>seq2997
Length=2481227
Score = 84.2 bits (92), Expect = 5e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||||| | || ||||||| ||| || ||||| || || || | |
Sbjct 411712 CCACCATGGAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGAC 411653
Query 288307 AGCGTGCGTCCG-TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| || | ||| ||||| | ||| || || || |||||||| | || ||| | ||
Sbjct 411652 AAAGTACATCCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGG 411593
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|||||||| ||||||||||| || || || || ||||||| || || | ||| ||
Sbjct 411592 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAAC 411533
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||| | |||||||| | | || || | ||| ||||| ||
Sbjct 411532 CTCGAG-GTGGTGGTCTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179606880571632
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