Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 122 1e-22
seq3018 86.0 7e-12
>seq3106
Length=22756556
Score = 122 bits (134), Expect = 1e-22
Identities = 385/580 (66%), Gaps = 19/580 (3%)
Strand=Plus/Minus
Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818
|| || || |||| |||||| ||||||||||||||||| || | |||||||||||
Sbjct 217551 TACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATG 217492
Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACG 125877
|| |||||||| || || | || ||| ||| || || | || | | ||| |
Sbjct 217491 AAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCT 217433
Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937
|| | ||| |||| ||||||| ||| ||| ||||||| || || || ||
Sbjct 217432 GTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCAC 217373
Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGC-TTCCCGCACGATGGCGT 125996
||| | || ||| || |||| ||| ||| ||| ||||| || || | || | |
Sbjct 217372 TGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCCT 217314
Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTC---CACGGCAAAC 126052
| | | | | ||||||| || | || |||||| | || || ||| ||
Sbjct 217313 TCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA--TCAGGCA-GGCGAAG 217258
Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112
|| ||| || ||||| || | | |||||||||||| || ||| || || ||||||
Sbjct 217257 TCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATG 217198
Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
|| ||||| ||||||| |||||| |||| | ||||| ||||| || || ||||| || ||
Sbjct 217197 AGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTC 217139
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACT 126230
||| || || || | | || || || | | | || |||||| ||| |||
Sbjct 217138 CACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAGC 217080
Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290
|| ||||| | || ||| ||| | ||| || | ||||| ||| || | |||||
Sbjct 217079 GCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGA 217023
Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330
|| | ||||| | ||||||||| || |||| |||||
Sbjct 217022 ACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983
>seq3018
Length=3443724
Score = 86.0 bits (94), Expect = 7e-12
Identities = 87/111 (78%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125
|||| || | | |||||||||||| || ||| || || |||||||| ||||| ||||
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 126126 TCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175
||| |||||| |||| | ||||| ||||| || || ||||| || ||||||
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597330124003520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |