Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3106 122 1e-22 seq3018 86.0 7e-12 >seq3106 Length=22756556 Score = 122 bits (134), Expect = 1e-22 Identities = 385/580 (66%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || |||| |||||| ||||||||||||||||| || | ||||||||||| Sbjct 217551 TACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATG 217492 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACG 125877 || |||||||| || || | || ||| ||| || || | || | | ||| | Sbjct 217491 AAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCT 217433 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 || | ||| |||| ||||||| ||| ||| ||||||| || || || || Sbjct 217432 GTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCAC 217373 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGC-TTCCCGCACGATGGCGT 125996 ||| | || ||| || |||| ||| ||| ||| ||||| || || | || | | Sbjct 217372 TGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCCT 217314 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTC---CACGGCAAAC 126052 | | | | | ||||||| || | || |||||| | || || ||| || Sbjct 217313 TCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA--TCAGGCA-GGCGAAG 217258 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || ||||| || | | |||||||||||| || ||| || || |||||| Sbjct 217257 TCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATG 217198 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || ||||| ||||||| |||||| |||| | ||||| ||||| || || ||||| || || Sbjct 217197 AGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTC 217139 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACT 126230 ||| || || || | | || || || | | | || |||||| ||| ||| Sbjct 217138 CACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAGC 217080 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 || ||||| | || ||| ||| | ||| || | ||||| ||| || | ||||| Sbjct 217079 GCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGA 217023 Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 || | ||||| | ||||||||| || |||| ||||| Sbjct 217022 ACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983 >seq3018 Length=3443724 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||||||||| || ||| || || |||||||| ||||| |||| Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 126126 TCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| |||| | ||||| ||||| || || ||||| || |||||| Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330124003520