Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3082 136 4e-27 seq2965 118 1e-21 seq3135 96.9 3e-15 seq3063 96.9 3e-15 seq3105 89.7 5e-13 seq3061 82.4 8e-11 >seq3082 Length=10725151 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 1251220 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251161 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| || ||||| ||||| || || Sbjct 1251160 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCC 1251101 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || ||||| || | || | |||| Sbjct 1251100 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTC 1251041 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| ||||| ||||| ||||||||||| Sbjct 1251040 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 1251448 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251389 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| |||||||| |||||||| || Sbjct 1251388 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251329 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || ||||| || | ||| | |||| Sbjct 1251328 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 1251269 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 1251268 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 1251661 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 1251602 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| |||||||| |||||||| || || || || ||| Sbjct 1251601 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 1251542 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||||||| | || | ||||||||| |||| || Sbjct 1251541 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 1251482 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1251481 TTCACGAAGATCTGCAT 1251465 >seq2965 Length=1497097 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||||||| ||||||| ||||||||||| Sbjct 1203854 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 1203795 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| || || || || || || ||||| || || ||| Sbjct 1203794 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 1203735 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| || | || Sbjct 1203734 ACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1203675 Query 64427 TTTACGAAAATTTGCATT 64444 |||||||| || |||||| Sbjct 1203674 TTTACGAAGATCTGCATT 1203657 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||||||| ||||||| ||||||||||| Sbjct 1204082 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 1204023 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| || || || || || || ||||| || || ||| Sbjct 1204022 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 1203963 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| || | || Sbjct 1203962 ACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1203903 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1203902 TTCACGAAGATCTGCAT 1203886 >seq3135 Length=60673567 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || | || || || |||| || ||||| ||||||||| Sbjct 60530416 GACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCA 60530357 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-AC 64368 | | || || |||||||||| || || ||||| || ||||| | |||| ||||| || Sbjct 60530356 AATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA-TTTTGGCTTTGAC 60530298 Query 64369 AACCTCCACT-GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427 | || |||| || || | || || || || | || | ||||||||| | | || | Sbjct 60530297 ATTCT-CACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCT 60530239 Query 64428 TTACGAAAATTTGCAT 64443 | ||||| || ||||| Sbjct 60530238 TCACGAATATCTGCAT 60530223 >seq3063 Length=7952490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||| | || || || |||||||||||||||| | Sbjct 5877730 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5877671 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||| | ||||| || ||||| || || | || |||| ||||| || ||||| Sbjct 5877670 CAAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5877611 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||||||| || | || | || || || Sbjct 5877610 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAAC 5877551 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||| | || || | |||||||||||||| ||||| || Sbjct 5877550 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500 >seq3105 Length=21505965 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 || || | ||| | ||| ||||||| || || || ||||||||||||||||| | | Sbjct 7417339 CCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAA 7417398 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 || || | ||||| || || | | ||| | || |||| ||||| || ||||||||| Sbjct 7417399 GTACGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATT 7417458 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT-TC 64398 ||||| || || || || || ||||||| || | || || | || || || | || Sbjct 7417459 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC-CAGGGGTTCAGTCTC 7417517 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | |||||| || || || |||||||| ||||| |||| || Sbjct 7417518 GTGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565 >seq3061 Length=7642621 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/218 (69%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| ||||| ||||||| || | || ||||||||||||||||| | | |||| Sbjct 2174635 AATCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCAT 2174576 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| || || || ||| | || |||| || || || |||||||||||||| Sbjct 2174575 CCATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCC 2174520 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || || || || || ||||||| || || || || | || | | | || Sbjct 2174519 TTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTG 2174460 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||| || || || | ||||| |||||| ||||| Sbjct 2174459 ATGGTCTTTCCTGT-AAGGGTTTTATGAAAATCTGCAT 2174423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625163959360