Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 95.1 1e-14
seq3082 84.2 2e-11
>seq3106
Length=22756556
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCA 52684
||||| ||||||| | |||| || |||| || ||||| | ||||||||| ||| |
Sbjct 217340 ATCGAGCAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCG-A 217398
Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC--AG 52742
| |||| ||||||||||||| ||||| || | || || | |||| |||| |
Sbjct 217399 GCTCATGAAGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCT-GGGCTTTG 217457
Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802
||| || ||||| | ||||| ||||| || ||| | || ||||| || || ||
Sbjct 217458 GCAAGGTTTTTCAA-GTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGG 217516
Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
||||| ||||| || |||||| | || ||||||||| ||
Sbjct 217517 AAGACAAACTTCTTTGAGAAGAGGGTAGGCGAGTATCAG 217555
>seq3082
Length=10725151
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| | ||| || || || || || || || | |
Sbjct 1251430 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251371
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| ||||| || |||||||| || ||| || || |
Sbjct 1251370 AAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251311
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| | | ||||||||| | || | || || ||||||||||| ||
Sbjct 1251310 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 1251251
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 1251250 ACGAAGATCTGCAT 1251237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496242896887680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |