Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3106 95.1 1e-14 seq3082 84.2 2e-11 >seq3106 Length=22756556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCA 52684 ||||| ||||||| | |||| || |||| || ||||| | ||||||||| ||| | Sbjct 217340 ATCGAGCAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCG-A 217398 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC--AG 52742 | |||| ||||||||||||| ||||| || | || || | |||| |||| | Sbjct 217399 GCTCATGAAGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCT-GGGCTTTG 217457 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 ||| || ||||| | ||||| ||||| || ||| | || ||||| || || || Sbjct 217458 GCAAGGTTTTTCAA-GTGGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGG 217516 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||||| ||||| || |||||| | || ||||||||| || Sbjct 217517 AAGACAAACTTCTTTGAGAAGAGGGTAGGCGAGTATCAG 217555 >seq3082 Length=10725151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| | ||| || || || || || || || | | Sbjct 1251430 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251371 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| || || | Sbjct 1251370 AAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251311 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||||||||| | || | || || ||||||||||| || Sbjct 1251310 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 1251251 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1251250 ACGAAGATCTGCAT 1251237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242896887680