Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3131 158 2e-33 seq3116 138 2e-27 >seq3131 Length=50742376 Score = 158 bits (174), Expect = 2e-33 Identities = 204/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||| || || ||||| ||||| |||| || || || ||||| | Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 ||||| || || || || || || || || |||||||| || ||||| || ||| Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || || || |||| ||| | ||| |||| ||||| || Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 || | || || |||||||| |||| | | | | || || || | || || | ||| Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||||||||| || ||||| || |||||||||||| Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCT 34218656 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| || | || || |||| | || ||| |||| || || || || ||||| || Sbjct 34217336 ATTAGCCGGCTTGTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGC 34217277 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 |||||||| || ||||| || || | |||||| ||||||||||||||||| | || ||| Sbjct 34217276 ACATCGCACACTCTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGC 34217217 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | ||| || || || | ||||| |||||||| || ||||| | | ||| | Sbjct 34217216 ACCAGACCGAAGACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGG 34217157 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| ||| | || || || |||||||| ||||| || ||||| || || ||||| Sbjct 34217156 TACATCATCTCTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAAT 34217101 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| ||| ||| || |||||||| ||||| || ||| | | | ||| Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || ||||| || || | || ||||||||||||| || ||||| |||||||| Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || |||| | | || |||||| |||| || || ||||||| || || Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAACCTCATTTGAATCAGGAAG 34215758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| | || ||||| || | ||| || Sbjct 34215408 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACGGGAGGAAGCGCTCTGGTG 34215349 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||||||||||| ||||| Sbjct 34215348 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATGCGCATTGTAAGTT 34215289 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||| |||| | || |||||| Sbjct 34215288 GGTGGACTGTCGATCAGATGAGATCTGGCT 34215259 Score = 89.7 bits (98), Expect = 7e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| | ||| || | | | || Sbjct 34217846 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCTACTAATATA 34217787 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAATCAT 9553 || |||||||| | || |||| | ||| ||| | || | || |||| | Sbjct 34217786 GAGTTGTTGTAGAGAAACTGTTGAAAGTTATAAACTTGG--TCATCAATTTGAAAGGTGT 34217729 Query 9554 CAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGT 9613 |||||| || | ||||||| | || || || || ||||||| || || |||||||||| Sbjct 34217728 CAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATGCGGTTCTGGT 34217669 Query 9614 ACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||| || | ||| ||| || | ||| |||||||| | || | ||| || ||||| Sbjct 34217668 ACTGGAATTGCTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAATGATACCC 34217611 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| | ||||| ||||| | | || | || ||||| ||||| || Sbjct 34217610 GCTCAAATGCTGTACATAGTCTTCAATCACTATCTTAATCGTTTCTCC 34217563 >seq3116 Length=27942054 Score = 138 bits (152), Expect = 2e-27 Identities = 181/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || |||| || || || || || || || || ||||| || ||||||||| Sbjct 11714719 GTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTAC 11714778 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 ||||||||||||| || ||| ||| || || | |||||| |||||||| | |||| Sbjct 11714779 TGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCG 11714838 Query 9053 ATGATGCTCTCACCGAAGATGG-CACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 || || ||||| || ||||||| ||| | || |||||| | || || || | ||| Sbjct 11714839 ATCATACTCTCCCCAAAGATGGAGTTCGGTAGGC-ATTTTTCAAGGAGCAATCCTGGGTA 11714897 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | ||| |||| ||| ||||| | | |||||||| || || |||||||| || Sbjct 11714898 GAACTCTAAAGCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTC 11714957 Query 9172 ACCTACAA 9179 ||||||| Sbjct 11714958 CCCTACAA 11714965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723699557489600