Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 158 2e-33
seq3116 138 2e-27
>seq3131
Length=50742376
Score = 158 bits (174), Expect = 2e-33
Identities = 204/282 (72%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| |||||||| || || ||||| ||||| |||| || || || ||||| |
Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
||||| || || || || || || || || |||||||| || ||||| || |||
Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
|||| || ||||||||||| || || || |||| ||| | ||| |||| ||||| ||
Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
|| | || || |||||||| |||| | | | | || || || | || || | |||
Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||||||||| || ||||| || ||||||||||||
Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCT 34218656
Score = 138 bits (152), Expect = 2e-27
Identities = 172/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
||||| || | || || |||| | || ||| |||| || || || || ||||| ||
Sbjct 34217336 ATTAGCCGGCTTGTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGC 34217277
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
|||||||| || ||||| || || | |||||| ||||||||||||||||| | || |||
Sbjct 34217276 ACATCGCACACTCTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGC 34217217
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | ||| || || || | ||||| |||||||| || ||||| | | ||| |
Sbjct 34217216 ACCAGACCGAAGACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGG 34217157
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|||| ||| | || || || |||||||| ||||| || ||||| || || |||||
Sbjct 34217156 TACATCATCTCTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAAT 34217101
Score = 105 bits (116), Expect = 1e-17
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181
||||||||||| ||| ||| || |||||||| ||||| || ||| | | | |||
Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874
Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241
|| || || ||||| || || | || ||||||||||||| || ||||| ||||||||
Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814
Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || |||| | | || |||||| |||| || || ||||||| || ||
Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAACCTCATTTGAATCAGGAAG 34215758
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| | || ||||| || | ||| ||
Sbjct 34215408 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACGGGAGGAAGCGCTCTGGTG 34215349
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| || || || || ||||||||||| ||||||||||||| |||||
Sbjct 34215348 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATGCGCATTGTAAGTT 34215289
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| |||||||| |||| | || ||||||
Sbjct 34215288 GGTGGACTGTCGATCAGATGAGATCTGGCT 34215259
Score = 89.7 bits (98), Expect = 7e-13
Identities = 195/288 (68%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || | ||||| |||||||| || |||| | ||| || | | | ||
Sbjct 34217846 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCTACTAATATA 34217787
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAATCAT 9553
|| |||||||| | || |||| | ||| ||| | || | || |||| |
Sbjct 34217786 GAGTTGTTGTAGAGAAACTGTTGAAAGTTATAAACTTGG--TCATCAATTTGAAAGGTGT 34217729
Query 9554 CAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGT 9613
|||||| || | ||||||| | || || || || ||||||| || || ||||||||||
Sbjct 34217728 CAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATGCGGTTCTGGT 34217669
Query 9614 ACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671
|||| || | ||| ||| || | ||| |||||||| | || | ||| || |||||
Sbjct 34217668 ACTGGAATTGCTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAATGATACCC 34217611
Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
||| | ||||| ||||| | | || | || ||||| ||||| ||
Sbjct 34217610 GCTCAAATGCTGTACATAGTCTTCAATCACTATCTTAATCGTTTCTCC 34217563
>seq3116
Length=27942054
Score = 138 bits (152), Expect = 2e-27
Identities = 181/248 (73%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || |||| || || || || || || || || ||||| || |||||||||
Sbjct 11714719 GTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTAC 11714778
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
||||||||||||| || ||| ||| || || | |||||| |||||||| | ||||
Sbjct 11714779 TGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCG 11714838
Query 9053 ATGATGCTCTCACCGAAGATGG-CACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111
|| || ||||| || ||||||| ||| | || |||||| | || || || | |||
Sbjct 11714839 ATCATACTCTCCCCAAAGATGGAGTTCGGTAGGC-ATTTTTCAAGGAGCAATCCTGGGTA 11714897
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | ||| |||| ||| ||||| | | |||||||| || || |||||||| ||
Sbjct 11714898 GAACTCTAAAGCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTC 11714957
Query 9172 ACCTACAA 9179
|||||||
Sbjct 11714958 CCCTACAA 11714965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723699557489600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |