Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3106 109 7e-19 seq3018 86.0 8e-12 >seq3106 Length=22756556 Score = 109 bits (120), Expect = 7e-19 Identities = 381/578 (66%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || |||| |||||| ||||||||||||||||| || || ||||||||||| Sbjct 217551 TACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATG 217492 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACG 127350 || |||||||| || || | || ||| ||| || || | || | | ||| | Sbjct 217491 AAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCT 217433 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | ||| |||| ||||||| ||| ||| ||||||| || || || || Sbjct 217432 GTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCAC 217373 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGC-TTCCCGTACGATGGCGT 127469 ||| | || ||| || |||| ||| ||| || || || || || | || | | Sbjct 217372 TGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCCT 217314 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG-CAAACTC 127527 | | | | | ||||||| || | | || |||||| | | ||| | || || Sbjct 217313 TCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA-TCAGGCAGGCGAAGTC 217256 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| || ||||| || | | |||||||||||| || ||| || || |||||||| Sbjct 217255 ACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAG 217196 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 ||||| ||||||| |||||| |||| | ||||| || ||||| || ||||| || |||| Sbjct 217195 TCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCA 217137 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 127705 | || || || | | || || || | | | | |||||| ||| ||| | Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAGCGC 217078 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 | ||||| | | ||| ||| | ||| || | ||||| ||| || | ||||| | Sbjct 217077 AAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAAC 217021 Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||||| | ||||||||| || |||| ||||| Sbjct 217020 TCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983 >seq3018 Length=3443724 Score = 86.0 bits (94), Expect = 8e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||||||||| || ||| || || |||||||| ||||| |||| Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 127599 TCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| |||| | ||||| || ||||| || ||||| || |||||| Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483089167040