Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 109 7e-19
seq3018 86.0 8e-12
>seq3106
Length=22756556
Score = 109 bits (120), Expect = 7e-19
Identities = 381/578 (66%), Gaps = 15/578 (3%)
Strand=Plus/Minus
Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291
|| || || |||| |||||| ||||||||||||||||| || || |||||||||||
Sbjct 217551 TACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATG 217492
Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACG 127350
|| |||||||| || || | || ||| ||| || || | || | | ||| |
Sbjct 217491 AAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCT 217433
Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410
|| | ||| |||| ||||||| ||| ||| ||||||| || || || ||
Sbjct 217432 GTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCAC 217373
Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGC-TTCCCGTACGATGGCGT 127469
||| | || ||| || |||| ||| ||| || || || || || | || | |
Sbjct 217372 TGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCCT 217314
Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG-CAAACTC 127527
| | | | | ||||||| || | | || |||||| | | ||| | || ||
Sbjct 217313 TCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA-TCAGGCAGGCGAAGTC 217256
Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587
||| || ||||| || | | |||||||||||| || ||| || || ||||||||
Sbjct 217255 ACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAG 217196
Query 127588 ACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
||||| ||||||| |||||| |||| | ||||| || ||||| || ||||| || ||||
Sbjct 217195 TCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCA 217137
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 127705
| || || || | | || || || | | | | |||||| ||| ||| |
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAGCGC 217078
Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765
| ||||| | | ||| ||| | ||| || | ||||| ||| || | ||||| |
Sbjct 217077 AAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAAC 217021
Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803
| | ||||| | ||||||||| || |||| |||||
Sbjct 217020 TCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983
>seq3018
Length=3443724
Score = 86.0 bits (94), Expect = 8e-12
Identities = 87/111 (78%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
|||| || | | |||||||||||| || ||| || || |||||||| ||||| ||||
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 127599 TCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
||| |||||| |||| | ||||| || ||||| || ||||| || ||||||
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613483089167040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |