Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3106 179 6e-40 >seq3106 Length=22756556 Score = 179 bits (198), Expect = 6e-40 Identities = 566/866 (65%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || ||||| ||||| || || | || || |||||||| | ||||| | Sbjct 217538 TCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATGAAGTCAAATGGAT 217479 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | | ||| ||| | ||| ||| || || | || | |||||| ||||| || | Sbjct 217478 TTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACT 217419 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||||| || | ||| |||| ||||| || || | |||| | || || | || ||| Sbjct 217418 CGATGTA-CTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCC 217360 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | || ||||||| ||| || ||| || | | | ||||| | || | | | Sbjct 217359 GTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCTCCTTCACCCTCTGCTCT 217300 Query 159887 CCCGG-CT-TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 || || ||| || ||| ||| |||| ||||| || ||||| |||||||| | Sbjct 217299 GAGGGTCTATGC-----ATCAGGTGCTTGAACATCAGGCAGGCGAAGTCACAGTGCAGGC 217245 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||| || | ||||| || ||||| | | ||||||| ||||||| || || | Sbjct 217244 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 217185 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || || | |||||||| ||| ||||||||| || |||||||| ||||| | Sbjct 217184 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 217125 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | || | | || ||| ||| ||| | |||| |||| | |||||| || | Sbjct 217124 CTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCG 217065 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA--ATCTGTCCTGCTCCTT 160182 |||||| | || |||||| ||||| ||| || || | | || | | ||| | Sbjct 217064 ACTTCTTCACA---CAGGGCATGGTCTCGATGGCATTGAAGAGGAACTCCCTTTCTC--T 217010 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 ||| ||||| |||| | || || ||||||||| | || | ||||| || Sbjct 217009 GGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAATGAATGTTTTCCAT 216950 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA-GATACTGCACCTCCTGTGTGAACC 160301 ||| ||||| ||| ||||||| | ||||| ||| || || || || |||||| Sbjct 216949 GGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATT-TGAACTTCTTGGCTGAACC 216891 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | ||| ||| |||| || | || ||| ||| ||||||||||||| ||||| | Sbjct 216890 GCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGCCAGAACGTGTG 216831 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 | || || | |||||| || || || ||||||||| | ||||| || | Sbjct 216830 ATATAAAGTATCTCTCCTCGGGCTTCAG---GGCTTCCCAGTGCTGAATGTCTTTGGAAA 216774 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATGG 160481 ||| ||||| || || ||||| || |||| || | || ||||| ||| ||| Sbjct 216773 GATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGT 216714 Query 160482 CGTGCTCTCTGATCGGAAAAGTGACA 160507 | || | | ||| || || ||||| Sbjct 216713 CATGGTATTCGATAGGGAAGATGACA 216688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795123950400640