Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 179 6e-40
>seq3106
Length=22756556
Score = 179 bits (198), Expect = 6e-40
Identities = 566/866 (65%), Gaps = 21/866 (2%)
Strand=Plus/Minus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
||||||| || ||||| ||||| || || | || || |||||||| | ||||| |
Sbjct 217538 TCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCATGAAGTCAAATGGAT 217479
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
| | ||| ||| | ||| ||| || || | || | |||||| ||||| || |
Sbjct 217478 TTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACT 217419
Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826
||||||| || | ||| |||| ||||| || || | |||| | || || | || |||
Sbjct 217418 CGATGTA-CTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCC 217360
Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886
| || ||||||| ||| || ||| || | | | ||||| | || | | |
Sbjct 217359 GTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCTCCTTCACCCTCTGCTCT 217300
Query 159887 CCCGG-CT-TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944
|| || ||| || ||| ||| |||| ||||| || ||||| |||||||| |
Sbjct 217299 GAGGGTCTATGC-----ATCAGGTGCTTGAACATCAGGCAGGCGAAGTCACAGTGCAGGC 217245
Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004
|||| || | ||||| || ||||| | | ||||||| ||||||| || || |
Sbjct 217244 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 217185
Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064
| ||||| || || | |||||||| ||| ||||||||| || |||||||| ||||| |
Sbjct 217184 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 217125
Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124
| || | | || ||| ||| ||| | |||| |||| | |||||| || |
Sbjct 217124 CTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCG 217065
Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA--ATCTGTCCTGCTCCTT 160182
|||||| | || |||||| ||||| ||| || || | | || | | ||| |
Sbjct 217064 ACTTCTTCACA---CAGGGCATGGTCTCGATGGCATTGAAGAGGAACTCCCTTTCTC--T 217010
Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242
||| ||||| |||| | || || ||||||||| | || | ||||| ||
Sbjct 217009 GGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAATGAATGTTTTCCAT 216950
Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA-GATACTGCACCTCCTGTGTGAACC 160301
||| ||||| ||| ||||||| | ||||| ||| || || || || ||||||
Sbjct 216949 GGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATT-TGAACTTCTTGGCTGAACC 216891
Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361
| ||| ||| |||| || | || ||| ||| ||||||||||||| ||||| |
Sbjct 216890 GCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGCCAGAACGTGTG 216831
Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421
| || || | |||||| || || || ||||||||| | ||||| || |
Sbjct 216830 ATATAAAGTATCTCTCCTCGGGCTTCAG---GGCTTCCCAGTGCTGAATGTCTTTGGAAA 216774
Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATGG 160481
||| ||||| || || ||||| || |||| || | || ||||| ||| |||
Sbjct 216773 GATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGT 216714
Query 160482 CGTGCTCTCTGATCGGAAAAGTGACA 160507
| || | | ||| || || |||||
Sbjct 216713 CATGGTATTCGATAGGGAAGATGACA 216688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795123950400640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |