Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3082 145 2e-29 seq3063 118 2e-21 seq3061 109 1e-18 seq2965 109 1e-18 seq3105 104 6e-17 seq3080 104 6e-17 >seq3082 Length=10725151 Score = 145 bits (160), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| ||||| ||||| || |||| ||||||||||| | ||| | ||||| Sbjct 1251221 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251162 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| ||||| || Sbjct 1251161 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATC 1251102 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || ||||| ||||| || Sbjct 1251101 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGT 1251042 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || |||||||| || ||||| |||||| Sbjct 1251041 CTTGCCAGTCAGGGTTTTCACGAAGATTTG---CATTTT 1251006 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 1251676 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251617 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 1251616 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251557 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || |||| ||||| ||| Sbjct 1251556 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 1251497 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 1251496 TTGCCAGTCAGTGTCTTCACGAAGATCTG 1251468 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| ||||| ||||| || |||| ||||||||||| | ||| | ||||| Sbjct 1251449 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251390 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| ||| ||| |||||| || Sbjct 1251389 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC 1251330 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || |||| ||||| || Sbjct 1251329 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGT 1251270 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||| || || || Sbjct 1251269 CTTGCCAGTCAGAGTCTTCACGAAGATCTG 1251240 >seq3063 Length=7952490 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||||| |||||||| |||||| |||| | |||||| |||| |||||| Sbjct 5877723 CGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTG 5877664 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || | ||||| || | ||||| || ||| ||||||| Sbjct 5877663 CATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 5877604 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | |||| | | || || | | Sbjct 5877603 TCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGG 5877544 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||| | ||||| || ||||| || ||||| || Sbjct 5877543 GTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTG 5877506 >seq3061 Length=7642621 Score = 109 bits (120), Expect = 1e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| ||||| || ||||| | ||||||||| | |||||| |||| |||||| | ||| Sbjct 2174633 TCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCC 2174574 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||| || || || ||||| || | || || || ||| ||||||||| Sbjct 2174573 ATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTT 2174518 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| || ||| || ||||||| | ||| | | | ||||| Sbjct 2174517 ATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGAT 2174458 Query 199594 CGTCTTACCCGTGAGAGTTTT 199614 ||||| || || || ||||| Sbjct 2174457 GGTCTTTCCTGTAAGGGTTTT 2174437 >seq2965 Length=1497097 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| | || | || || Sbjct 1203870 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 1203811 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | ||||||||| || || || || || Sbjct 1203810 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1203751 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | ||||| || | ||||| || Sbjct 1203750 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGT 1203691 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 1203690 CTTGCCAGTGAGGGTCTTTACGAAGATCTG 1203661 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||| | | || | || || Sbjct 1204098 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTC 1204039 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | ||||||||| || || || || || Sbjct 1204038 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1203979 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | ||||| || | ||||| || Sbjct 1203978 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGT 1203919 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 1203918 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 1203889 >seq3105 Length=21505965 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||||| || ||||| ||||||||||| | |||||| |||| |||||| Sbjct 7417342 CGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTA 7417401 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| || | | || ||||| || | ||||| || ||| ||||||| Sbjct 7417402 CGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 7417461 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | ||| || Sbjct 7417462 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGG 7417521 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||| ||||| || || | ||||| |||||||| Sbjct 7417522 ATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAAT 7417556 >seq3080 Length=10554711 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||| || ||||| || ||||||||||||||||| | |||||| |||| |||| | Sbjct 4932292 CGGAGTCTTAGCACAAGATGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATA 4932351 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||| ||||| || | ||||| || ||||| || |||| |||| || Sbjct 4932352 TGTCCATCTTCCAGTTGCTTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCT 4932411 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 4932412 TCCTTATCCTGGATCTT 4932428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178874110090648