Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 145 2e-29
seq3063 118 2e-21
seq3061 109 1e-18
seq2965 109 1e-18
seq3105 104 6e-17
seq3080 104 6e-17
>seq3082
Length=10725151
Score = 145 bits (160), Expect = 2e-29
Identities = 164/219 (75%), Gaps = 3/219 (1%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || ||||| ||||| ||||| || |||| ||||||||||| | ||| | |||||
Sbjct 1251221 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251162
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || |||||||| | ||||||||| || ||| ||||| ||
Sbjct 1251161 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATC 1251102
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| |||||| || | |||||| | | || || ||||| ||||| ||
Sbjct 1251101 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGT 1251042
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||| || || || |||||||| || ||||| ||||||
Sbjct 1251041 CTTGCCAGTCAGGGTTTTCACGAAGATTTG---CATTTT 1251006
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| ||||| || |||| ||||||||||| | ||| | ||||||
Sbjct 1251676 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251617
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| |||
Sbjct 1251616 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251557
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || |||| ||||| |||
Sbjct 1251556 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 1251497
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 1251496 TTGCCAGTCAGTGTCTTCACGAAGATCTG 1251468
Score = 140 bits (154), Expect = 8e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || ||||| ||||| ||||| || |||| ||||||||||| | ||| | |||||
Sbjct 1251449 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1251390
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| || | ||||||||| ||| ||| |||||| ||
Sbjct 1251389 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC 1251330
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| |||||| || | |||||| | | || || |||| ||||| ||
Sbjct 1251329 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGT 1251270
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || ||||| ||||| || || ||
Sbjct 1251269 CTTGCCAGTCAGAGTCTTCACGAAGATCTG 1251240
>seq3063
Length=7952490
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||||| ||||| |||||||| |||||| |||| | |||||| |||| ||||||
Sbjct 5877723 CGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTG 5877664
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| ||||| || | ||||| || | ||||| || ||| |||||||
Sbjct 5877663 CATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 5877604
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| || ||| | |||| | | || || | |
Sbjct 5877603 TCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGG 5877544
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||| | ||||| || ||||| || ||||| ||
Sbjct 5877543 GTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTG 5877506
>seq3061
Length=7642621
Score = 109 bits (120), Expect = 1e-18
Identities = 145/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
|||||| ||||| || ||||| | ||||||||| | |||||| |||| |||||| | |||
Sbjct 2174633 TCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCC 2174574
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||||||| || || || ||||| || | || || || ||| |||||||||
Sbjct 2174573 ATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTT 2174518
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||| ||||| ||| || ||| || ||||||| | ||| | | | |||||
Sbjct 2174517 ATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGAT 2174458
Query 199594 CGTCTTACCCGTGAGAGTTTT 199614
||||| || || || |||||
Sbjct 2174457 GGTCTTTCCTGTAAGGGTTTT 2174437
>seq2965
Length=1497097
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| ||||| || || |||||||| |||| ||||||||||| | || | || ||
Sbjct 1203870 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 1203811
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || |||||||| || | ||||||||| || || || || ||
Sbjct 1203810 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1203751
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||| || || | |||||| | | ||||| || | ||||| ||
Sbjct 1203750 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGT 1203691
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || ||||| || || || || || ||
Sbjct 1203690 CTTGCCAGTGAGGGTCTTTACGAAGATCTG 1203661
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| ||||| || || |||||||| |||| ||||||||| | | || | || ||
Sbjct 1204098 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTC 1204039
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || |||||||| || | ||||||||| || || || || ||
Sbjct 1204038 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1203979
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||| || || | |||||| | | ||||| || | ||||| ||
Sbjct 1203978 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGT 1203919
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || ||||| || ||||| || || ||
Sbjct 1203918 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 1203889
>seq3105
Length=21505965
Score = 104 bits (114), Expect = 6e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||||| ||||| || ||||| ||||||||||| | |||||| |||| ||||||
Sbjct 7417342 CGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTA 7417401
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| || | | || ||||| || | ||||| || ||| |||||||
Sbjct 7417402 CGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 7417461
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | ||||| | ||| ||
Sbjct 7417462 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGG 7417521
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623
|||| ||||| || || | ||||| ||||||||
Sbjct 7417522 ATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAAT 7417556
>seq3080
Length=10554711
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||| || ||||| || ||||||||||||||||| | |||||| |||| |||| |
Sbjct 4932292 CGGAGTCTTAGCACAAGATGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATA 4932351
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||||||| ||||| || | ||||| || ||||| || |||| |||| ||
Sbjct 4932352 TGTCCATCTTCCAGTTGCTTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCT 4932411
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 4932412 TCCTTATCCTGGATCTT 4932428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178874110090648
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