Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3106 361 5e-95 seq2965 165 8e-36 seq3082 140 3e-28 seq3135 109 5e-19 seq3143 102 8e-17 seq3126 91.5 1e-13 >seq3106 Length=22756556 Score = 361 bits (400), Expect = 5e-95 Identities = 667/972 (69%), Gaps = 22/972 (2%) Strand=Plus/Minus Query 132549 CTAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGCAA---ACATCACGCCAAATTT 132605 ||||||||| |||||||| || || | | ||| ||| |||| || || | | Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556 Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 ||||| ||||| ||| | |||||||| || || || || || || | ||||| | Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT---CAGGTCGACGAG 132722 ||| || || || || || | ||| | | | |||| | ||| || | | Sbjct 217495 CATGAAGTCAAATGGATTTTCCAC-TTGAAAAACCT--TGCCAAAGCCCAGCTCTAGCAT 217439 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 |||||||| ||||||||||||||||| ||| |||| ||||| || | || | ||| Sbjct 217438 GAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAG 217379 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 ||| |||| || || ||||| || |||||||| ||| |||| | || || Sbjct 217378 CTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAAT 217319 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 ||| | || | | | | || | |||| || ||||||||||||| ||| || || Sbjct 217318 CTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAA 217259 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 ||| || |||| |||||| || ||| |||||||| ||| || || | ||||||||| Sbjct 217258 GTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCAT 217199 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 ||| || ||||| || ||||| || || | || ||| || ||||| |||| ||| || Sbjct 217198 GAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTC 217139 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 ||||| || || || |||| ||| || || | ||||| |||||| | |||||||| Sbjct 217138 CACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCG 217079 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA--AA 133140 || ||||| || | ||| | | || || ||||| || |||||||| || || | || Sbjct 217078 CAAGGCCCAGTCCGACTTCT---TCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAA 217022 Query 133141 CGGAGTTTCTCTTCCGAGGAACGCACG---TAGGTGTCGATGAGGGTCGAATACATTTCC 133197 | ||||||| |||| | || || ||||||||| |||||||| Sbjct 217021 CTCCCTTTCTCT-----GGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCA 216967 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257 || || | ||| ||||||||||| || |||||||| || || || ||||| | || Sbjct 216966 GAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGA 216907 Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 |||||||| ||| ||||| |||| ||| || ||||| ||||| ||||||||||| || Sbjct 216906 ACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAG 216847 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGC 133377 || ||||| ||||| || || | | ||| | | |||| | ||||||| | Sbjct 216846 AAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGA 216787 Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 |||| ||||| || ||||||||||| | |||||||| || ||||||||||| || ||| Sbjct 216786 ATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATAC 216727 Query 133438 ATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGC 133497 || ||| ||||| |||| || || || || ||||| || |||||||| || | | Sbjct 216726 ATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAAGCGCCGGGGGTTCTCTCTC 216667 Query 133498 AACAGCGGCTCC 133509 | ||| || ||| Sbjct 216666 AGCAGTGGTTCC 216655 >seq2965 Length=1497097 Score = 165 bits (182), Expect = 8e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 1203657 AATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203716 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1203717 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1203776 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| |||| |||||||||| |||||||| Sbjct 1203777 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 1203836 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| ||||| ||||||| ||| Sbjct 1203837 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1203885 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| |||| ||||| |||| || || Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1204112 >seq3082 Length=10725151 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || || ||||| ||||||||| | || || ||| || Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | || | || |||| || || || || ||||| | ||| Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGAC 1251125 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || |||||| Sbjct 1251126 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1251185 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || | || ||||| |||||||||| ||||||| || Sbjct 1251186 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| ||| | Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || ||||| | ||||| Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251356 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1251357 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251416 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| |||||||||| ||||||| || Sbjct 1251417 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251463 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1251465 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1251524 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || ||||| | ||||| Sbjct 1251525 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251584 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1251585 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251644 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||| || ||| |||| || ||| Sbjct 1251645 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 1251692 >seq3135 Length=60673567 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || | |||||| ||||||||| | || || ||| ||| | Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| || | | |||| ||||||| ||||| || || || || ||||||| Sbjct 60530283 GACACCAGTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCA 60530341 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 | || || | | || |||||||||||||| |||| || || ||| |||||||| Sbjct 60530342 GCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAA 60530401 Query 38423 CATCCAAAAGGA 38434 ||| || || || Sbjct 60530402 CATTCAGAAAGA 60530413 >seq3143 Length=88675666 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||| |||||| ||| || | |||||||| |||||| | || | Sbjct 4807148 CCTCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCT 4807089 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || || || || || ||||| ||||| |||||||| ||||||||||| | Sbjct 4807088 TCAGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGG 4807029 Query 133037 CCACCA 133042 |||||| Sbjct 4807028 CCACCA 4807023 >seq3126 Length=40167016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || |||| || | |||| |||||| ||| Sbjct 36688979 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACCACCATCCTCGAGGTCGAGCCCAGT 36688920 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | ||| ||||||| ||||| ||| | || || | || || Sbjct 36688919 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36688867 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | ||| ||||||||||||| || | | || ||| ||||||||| Sbjct 36688866 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36688807 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || || || |||| ||| | || |||| || Sbjct 36688806 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36688760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153143208960