Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3099 145 3e-29 seq3108 140 1e-27 seq3133 105 3e-17 seq3114 98.7 4e-15 seq3063 96.9 1e-14 seq3105 93.3 2e-13 seq3073 93.3 2e-13 seq3128 89.7 2e-12 seq3061 87.8 7e-12 >seq3099 Length=15920349 Score = 145 bits (160), Expect = 3e-29 Identities = 273/400 (68%), Gaps = 5/400 (1%) Strand=Plus/Plus Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 ||||||| | || |||| || || || | | | ||| || || | ||||||||||| Sbjct 2306546 TCAAGTAGAATACAAAGAAGAGACAAAGAATGTCTTTCCAGAGGACGTATCATCTATGGT 2306605 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 || || || ||||| ||||| | |||| ||| |||| | |||| ||| || Sbjct 2306606 GCTGACAAAGATGAAGGAAACTGAAGAAGCTTATCTTGGGAAGACTGTTATCATTGCTGT 2306665 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||||| || ||||| || ||||| || | || ||||| ||| |||| | | Sbjct 2306666 AGTTACTGTGCCAGCTTACTTTAATGACCGTCATCATCAGGCAACCAAAAATGCTGCAGC 2306725 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||| | ||||| ||| ||||||| ||||| || |||| |||||| | || || Sbjct 2306726 CATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGATGCTGCTATTGCCTA 2306785 Query 451447 TGGACTAGGAAAATCAAAAGA-AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 ||| ||| | |||||| || |||| |||| | | | ||| |||| || | Sbjct 2306786 TGGCTTAG----AGAAAAAGATTGGAGCTGAAAGAAATGTGCTGATTTTTTATTTAGGAG 2306841 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | || ||| |||| || || || | ||||||||||| | |||||||| || | | Sbjct 2306842 GTGGCACTTTTGATGTGTCAGTCCTCACTATTGAAGATGGAATCTTTGAAGTGAAATCTA 2306901 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||| || || |||| || |||||| |||| || Sbjct 2306902 TAGCTGGTGACACCCACTTAGGTGGAGAAGATTTTGACAA 2306941 >seq3108 Length=23989115 Score = 140 bits (154), Expect = 1e-27 Identities = 257/371 (69%), Gaps = 7/371 (2%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAA-CTTTTGCTCCTGAAG 451250 ||| | |||| | ||| |||| | || ||||| || || || | ||| || ||| ||| Sbjct 13304836 AGGCAGGCCCAAAGTTCCAGTAGAATACAAAGGAGAGACAAAGAGCTTCTG-TCCA-AAG 13304779 Query 451251 AAATT-TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 ||| | ||||||||||| || || || ||||| |||| |||||| ||| |||| Sbjct 13304778 AAAGTATCATCTATGGTGCTGACAAAGATGAAGGAAATTGCAGAAGCTTATCTTGGGAAG 13304719 Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 | ||||| |||| || | |||| || ||||| || ||||| | || | || ||| Sbjct 13304718 ACTGTTACCAATGCTGTGGTCACTGAGCCAGCTTACTTTAATGACTCTCAGTGTCAGGCA 13304659 Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 || |||| ||| ||| | ||||||||| | ||||| || ||||||| ||||| || ||| Sbjct 13304658 ACCAAAGTTGCTGGAAACATTGCTGGTCTTAATGTATTTAGAATTATCAATGAGCCAACA 13304599 Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489 || |||||| | || ||||| |||| || ||| | || |||| |||| | | Sbjct 13304598 GCTGCTGCTGTTGCCTATGGCCTAGACAA---AAAGGTTGGAGCTGAAAGAAATGTGCTG 13304542 Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||||||| | || || | | |||| || | || | ||||||||||| | Sbjct 13304541 ACTTTTGATTTAGTAGGTGGCATTTTTGATGTGTCAATCCTCACTATTGAAGATGGAATC 13304482 Query 451550 TTTGAAGTAAA 451560 |||||||| || Sbjct 13304481 TTTGAAGTGAA 13304471 >seq3133 Length=50759066 Score = 105 bits (116), Expect = 3e-17 Identities = 263/395 (67%), Gaps = 22/395 (6%) Strand=Plus/Minus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 || || || |||||||| | | ||||| |||| || || |||||||| |||||| Sbjct 19049070 AAACCATACATTCAAGTTGACACTGGAGGTGGGCAAACCAAGACATTTGCTCCAGAAGAA 19049011 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 ||||| | |||||||| |||||||||||||||| | || ||| | || Sbjct 19049010 ATTTCTGCCATGGTTCTCACTAAAATGAAAGAAAGTGTGGAGGCGTATTTGGGAAAGAAG 19048951 Query 451313 GTTACTGATGCAGT-AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| ||||||| ||||||| || || || || |||||| ||||||||| Sbjct 19048950 GTTACTCATGCAGTCTTTTACTGTACCTGCCTACTTTAATGAT--------GCAAGCAAC 19048899 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| ||| | |||| || ||| | | || || ||||| || ||||| Sbjct 19048898 CAAAGATGCTGGAACAAGTGCTAAACGCAACGTTATGAGGATCATCAATGAGCCGACAGC 19048839 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 |||||| | || ||||| || | || | | | | | ||| || || || | || Sbjct 19048838 AGCTGCCATCGCTTATGGCCTGG----ATGAGAGGGA--GGGAGAGAAGAACATCCTGGT 19048785 Query 451492 ATTTGATTTTGGTGGAGGAAC--TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||||| | |||| ||| | ||| ||| || | || | || || |||| || Sbjct 19048784 ATTTGACCTATGTGGTGGAGCCTTCA--ATATAGCTCTTCTCACCATCGACAATGGTGTC 19048727 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCT 451584 || |||| ||| || ||||| |||||||| || Sbjct 19048726 TTCAAAGTCGTGGCCACTAATGGAGATACTCACCT 19048692 >seq3114 Length=26790417 Score = 98.7 bits (108), Expect = 4e-15 Identities = 336/511 (66%), Gaps = 17/511 (3%) Strand=Plus/Minus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||||| || | |||||||| | || |||||||||||||||| |||||||| || ||| Sbjct 7927184 GGAAAAGAATTGAGTAAGAGCATCAACCCTGATGAAGCTGTTGTTTATGGTGCAGCTGTT 7927125 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAGGAGATATTCTGTTAGTAGA 452085 || || || |||||| | || | | | |||||| | |||| | ||| | |||| Sbjct 7927124 CAGGCTGCCATTCTATCTGG-AGACAAGTCTAAAAATGTCCAAGATTTGCTGCTTTTAGA 7927066 Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA 452145 ||| | |||| |||||||| ||||||| ||||||||| | | ||| | | || Sbjct 7927065 TGTCTCTTCTCTTTCTCTTGGTATTGAAACGGCTGGTGGAGTCAAGACAGTCCTCTTCAA 7927006 Query 452146 ACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCA 452205 || ||| | |||| | ||| ||| || || || | | | | ||| || Sbjct 7927005 GCGTAATACTACCATTCTTACTAAGCAGACACAGACCTTCACTGCCTACACTGA----CA 7926950 Query 452206 ACCAGGT--GTA-ACT-ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATA 452261 ||||||| ||| || |||| ||| | |||||| || |||| ||||| ||||| | Sbjct 7926949 ACCAGGTTGGTATGCTCATTCCAGTATATGAAGGTGAGTGTGCCATGACCAAGGATAACA 7926890 Query 452262 ATAAACTAGGAGAATTT--ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319 | | || | ||| | || | | ||| |||| || || || |||||| Sbjct 7926889 ACCTGTTTGGCAAGTTTGAATTCAT--AGGCATATCTCCCATACCCCATGGTGTTCCTCA 7926832 Query 452320 AATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA 452379 |||||| | || | | || || |||| ||||| || || || | ||||| |||| | Sbjct 7926831 GATTGAAGTCACTTTTAATATTAATGCCAATGGCATCCTCAA-CTCTCTGCAG-TGAACA 7926774 Query 452380 ATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 | || | || |||| || ||||| || | ||||||||| | ||||| || | Sbjct 7926773 AAAGTCCAGGCAAAGAGAACAAGATTACTATCAATAATGATAAGGGCTGTTTAAGCAAGG 7926714 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGA 452469 | || || || | ||||| | |||||||| Sbjct 7926713 AGGACATAGAGCATATGGTCCAGGAAGCAGA 7926683 >seq3063 Length=7952490 Score = 96.9 bits (106), Expect = 1e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || | || || || || | ||||| | || Sbjct 5877503 ATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTCC 5877562 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | | || ||| | | || || || ||||||||||||||||||||||||||||| Sbjct 5877563 AACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 5877622 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || || || ||||| ||||||||| | |||||| | ||||| || Sbjct 5877623 CAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAAC 5877682 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | | ||| | || || || | || || ||||| Sbjct 5877683 ATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACT 5877720 >seq3105 Length=21505965 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || |||||||||||||||||||||||||| ||| | | || || | | | | Sbjct 7417478 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGCTACA 7417419 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||||||| | |||||| | ||||| || ||| | ||||| | || ||||| Sbjct 7417418 CAACTGGAAGATGGACGTACTTTGTCTGATTACAACATTCAAAAGGAGTCCACTCTTCAT 7417359 Query 391254 TTAGTATTAAGACT 391267 | || || ||||| Sbjct 7417358 CTTGTGTTGAGACT 7417345 >seq3073 Length=9224021 Score = 93.3 bits (102), Expect = 2e-13 Identities = 169/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGC---CAATAAACTGCATAA 96105 |||||| | |||||||| ||| || || || ||||| ||| | || | ||| | | Sbjct 662555 TGCAATCTTTGGCACTAAGGGGTCATCTGGGTTTGGATCACCTAGCAGTGAAC---AAAT 662611 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 ||||||||| |||||| ||| |||| || || ||| | | ||| |||||| | Sbjct 662612 GGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAG 662671 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| || || | ||||||||||||||||||| ||| ||||| || || Sbjct 662672 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTT 662731 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTC 96285 ||| || || | || |||||| ||||||| |||| || |||||| || || | Sbjct 662732 AGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTG 662791 Query 96286 ATAGGG 96291 ||| || Sbjct 662792 ATATGG 662797 >seq3128 Length=41762041 Score = 89.7 bits (98), Expect = 2e-12 Identities = 340/529 (64%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 |||||||| || || | || ||||||| |||||||| || || | ||| | || || Sbjct 41155423 GCAATTGGCATCGACTTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCACGGCAAA 41155482 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || || ||||| || || || || || || | || || || Sbjct 41155483 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCC--CA--GCTACGTGGCGTT 41155538 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 ||| || | || | || | ||| | || || || | | | ||| ||| || Sbjct 41155539 TACTGACACCGAGCGGCTGATCGGGGATGCGGCCAAGAACCA-GGTGGCCATGAATCCCC 41155597 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | || ||||| | || | ||| | ||| | Sbjct 41155598 AGAACACCGTCTTTGATGCCAAACGTCTGATCGGCCGGAAGTTCAACGATCCTGTTGTGC 41155657 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | ||| | || | | ||| | | || | ||| || ||| |||||| | | Sbjct 41155658 AGTCAGATATGAAGCTTTGGCCTTTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTGG 41155717 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || || ||||| || | |||| |||| || || || || ||||| ||||| | Sbjct 41155718 TGGTGTCCTACAAAGGGGAGAATAAAGCTTTCTACCCCGAGGAGATCTCATCAATGGTGC 41155777 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| || || ||||| | | | || || | || |||| || | Sbjct 41155778 TGACAAAGATGAAGGAGACTGCAGAGGCCTTTTTGGGCCACCCTATCACCAATGCCGTGA 41155837 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || || ||||||||||| | || || ||||| || || |||||||| | Sbjct 41155838 TCACTGTGCCAGCCTATTTCAATGACTCTCAGCGCCAAGCCACCAAGGATGCAGGTGTGA 41155897 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 | || || | ||||| || |||| || || || || ||||| ||||| Sbjct 41155898 TCGCAGGACTCAATGTGCTCAGAATCATCAACGAGCCCACAGCTGCTGC 41155946 >seq3061 Length=7642621 Score = 87.8 bits (96), Expect = 7e-12 Identities = 142/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || || || || || || || || | | |||| | || Sbjct 2174423 ATGCAGATTTTCAT-AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCA 2174481 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | | ||| | | || || || || ||||||||||||||||||||||||||| Sbjct 2174482 GACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAA 2174541 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || |||| ||||||||| | |||||| | ||||| || Sbjct 2174542 CAAAGGCTGATCTTTGCTGG----TAACTGGAAGATGGATGCACTTTGTCTGATTACAAC 2174597 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 2174598 ATTCAAAAGGAGACCACTCTTCA 2174620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975638813123552