Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3099 145 3e-29
seq3108 140 1e-27
seq3133 105 3e-17
seq3114 98.7 4e-15
seq3063 96.9 1e-14
seq3105 93.3 2e-13
seq3073 93.3 2e-13
seq3128 89.7 2e-12
seq3061 87.8 7e-12
>seq3099
Length=15920349
Score = 145 bits (160), Expect = 3e-29
Identities = 273/400 (68%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266
||||||| | || |||| || || || | | | ||| || || | |||||||||||
Sbjct 2306546 TCAAGTAGAATACAAAGAAGAGACAAAGAATGTCTTTCCAGAGGACGTATCATCTATGGT 2306605
Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326
|| || || ||||| ||||| | |||| ||| |||| | |||| ||| ||
Sbjct 2306606 GCTGACAAAGATGAAGGAAACTGAAGAAGCTTATCTTGGGAAGACTGTTATCATTGCTGT 2306665
Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386
| ||||||| || ||||| || ||||| || | || ||||| ||| |||| | |
Sbjct 2306666 AGTTACTGTGCCAGCTTACTTTAATGACCGTCATCATCAGGCAACCAAAAATGCTGCAGC 2306725
Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446
||||||||| | ||||| ||| ||||||| ||||| || |||| |||||| | || ||
Sbjct 2306726 CATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGATGCTGCTATTGCCTA 2306785
Query 451447 TGGACTAGGAAAATCAAAAGA-AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505
||| ||| | |||||| || |||| |||| | | | ||| |||| || |
Sbjct 2306786 TGGCTTAG----AGAAAAAGATTGGAGCTGAAAGAAATGTGCTGATTTTTTATTTAGGAG 2306841
Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565
| || ||| |||| || || || | ||||||||||| | |||||||| || | |
Sbjct 2306842 GTGGCACTTTTGATGTGTCAGTCCTCACTATTGAAGATGGAATCTTTGAAGTGAAATCTA 2306901
Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|||||| || || |||| || |||||| |||| ||
Sbjct 2306902 TAGCTGGTGACACCCACTTAGGTGGAGAAGATTTTGACAA 2306941
>seq3108
Length=23989115
Score = 140 bits (154), Expect = 1e-27
Identities = 257/371 (69%), Gaps = 7/371 (2%)
Strand=Plus/Minus
Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAA-CTTTTGCTCCTGAAG 451250
||| | |||| | ||| |||| | || ||||| || || || | ||| || ||| |||
Sbjct 13304836 AGGCAGGCCCAAAGTTCCAGTAGAATACAAAGGAGAGACAAAGAGCTTCTG-TCCA-AAG 13304779
Query 451251 AAATT-TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309
||| | ||||||||||| || || || ||||| |||| |||||| ||| ||||
Sbjct 13304778 AAAGTATCATCTATGGTGCTGACAAAGATGAAGGAAATTGCAGAAGCTTATCTTGGGAAG 13304719
Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369
| ||||| |||| || | |||| || ||||| || ||||| | || | || |||
Sbjct 13304718 ACTGTTACCAATGCTGTGGTCACTGAGCCAGCTTACTTTAATGACTCTCAGTGTCAGGCA 13304659
Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429
|| |||| ||| ||| | ||||||||| | ||||| || ||||||| ||||| || |||
Sbjct 13304658 ACCAAAGTTGCTGGAAACATTGCTGGTCTTAATGTATTTAGAATTATCAATGAGCCAACA 13304599
Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489
|| |||||| | || ||||| |||| || ||| | || |||| |||| | |
Sbjct 13304598 GCTGCTGCTGTTGCCTATGGCCTAGACAA---AAAGGTTGGAGCTGAAAGAAATGTGCTG 13304542
Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549
|||||||| | || || | | |||| || | || | ||||||||||| |
Sbjct 13304541 ACTTTTGATTTAGTAGGTGGCATTTTTGATGTGTCAATCCTCACTATTGAAGATGGAATC 13304482
Query 451550 TTTGAAGTAAA 451560
|||||||| ||
Sbjct 13304481 TTTGAAGTGAA 13304471
>seq3133
Length=50759066
Score = 105 bits (116), Expect = 3e-17
Identities = 263/395 (67%), Gaps = 22/395 (6%)
Strand=Plus/Minus
Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252
|| || || |||||||| | | ||||| |||| || || |||||||| ||||||
Sbjct 19049070 AAACCATACATTCAAGTTGACACTGGAGGTGGGCAAACCAAGACATTTGCTCCAGAAGAA 19049011
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
||||| | |||||||| |||||||||||||||| | || ||| | ||
Sbjct 19049010 ATTTCTGCCATGGTTCTCACTAAAATGAAAGAAAGTGTGGAGGCGTATTTGGGAAAGAAG 19048951
Query 451313 GTTACTGATGCAGT-AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
|||||| ||||||| ||||||| || || || || |||||| |||||||||
Sbjct 19048950 GTTACTCATGCAGTCTTTTACTGTACCTGCCTACTTTAATGAT--------GCAAGCAAC 19048899
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||||||| ||| | |||| || ||| | | || || ||||| || |||||
Sbjct 19048898 CAAAGATGCTGGAACAAGTGCTAAACGCAACGTTATGAGGATCATCAATGAGCCGACAGC 19048839
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491
|||||| | || ||||| || | || | | | | | ||| || || || | ||
Sbjct 19048838 AGCTGCCATCGCTTATGGCCTGG----ATGAGAGGGA--GGGAGAGAAGAACATCCTGGT 19048785
Query 451492 ATTTGATTTTGGTGGAGGAAC--TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549
|||||| | |||| ||| | ||| ||| || | || | || || |||| ||
Sbjct 19048784 ATTTGACCTATGTGGTGGAGCCTTCA--ATATAGCTCTTCTCACCATCGACAATGGTGTC 19048727
Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCT 451584
|| |||| ||| || ||||| |||||||| ||
Sbjct 19048726 TTCAAAGTCGTGGCCACTAATGGAGATACTCACCT 19048692
>seq3114
Length=26790417
Score = 98.7 bits (108), Expect = 4e-15
Identities = 336/511 (66%), Gaps = 17/511 (3%)
Strand=Plus/Minus
Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026
|||||| || | |||||||| | || |||||||||||||||| |||||||| || |||
Sbjct 7927184 GGAAAAGAATTGAGTAAGAGCATCAACCCTGATGAAGCTGTTGTTTATGGTGCAGCTGTT 7927125
Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAGGAGATATTCTGTTAGTAGA 452085
|| || || |||||| | || | | | |||||| | |||| | ||| | ||||
Sbjct 7927124 CAGGCTGCCATTCTATCTGG-AGACAAGTCTAAAAATGTCCAAGATTTGCTGCTTTTAGA 7927066
Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA 452145
||| | |||| |||||||| ||||||| ||||||||| | | ||| | | ||
Sbjct 7927065 TGTCTCTTCTCTTTCTCTTGGTATTGAAACGGCTGGTGGAGTCAAGACAGTCCTCTTCAA 7927006
Query 452146 ACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCA 452205
|| ||| | |||| | ||| ||| || || || | | | | ||| ||
Sbjct 7927005 GCGTAATACTACCATTCTTACTAAGCAGACACAGACCTTCACTGCCTACACTGA----CA 7926950
Query 452206 ACCAGGT--GTA-ACT-ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATA 452261
||||||| ||| || |||| ||| | |||||| || |||| ||||| ||||| |
Sbjct 7926949 ACCAGGTTGGTATGCTCATTCCAGTATATGAAGGTGAGTGTGCCATGACCAAGGATAACA 7926890
Query 452262 ATAAACTAGGAGAATTT--ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319
| | || | ||| | || | | ||| |||| || || || ||||||
Sbjct 7926889 ACCTGTTTGGCAAGTTTGAATTCAT--AGGCATATCTCCCATACCCCATGGTGTTCCTCA 7926832
Query 452320 AATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA 452379
|||||| | || | | || || |||| ||||| || || || | ||||| |||| |
Sbjct 7926831 GATTGAAGTCACTTTTAATATTAATGCCAATGGCATCCTCAA-CTCTCTGCAG-TGAACA 7926774
Query 452380 ATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438
| || | || |||| || ||||| || | ||||||||| | ||||| || |
Sbjct 7926773 AAAGTCCAGGCAAAGAGAACAAGATTACTATCAATAATGATAAGGGCTGTTTAAGCAAGG 7926714
Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGA 452469
| || || || | ||||| | ||||||||
Sbjct 7926713 AGGACATAGAGCATATGGTCCAGGAAGCAGA 7926683
>seq3063
Length=7952490
Score = 96.9 bits (106), Expect = 1e-14
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| ||||| || || || | || || || || | ||||| | ||
Sbjct 5877503 ATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTCC 5877562
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
| | || ||| | | || || || |||||||||||||||||||||||||||||
Sbjct 5877563 AACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 5877622
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || || || ||||| ||||||||| | |||||| | ||||| ||
Sbjct 5877623 CAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAAC 5877682
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | | ||| | || || || | || || |||||
Sbjct 5877683 ATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACT 5877720
>seq3105
Length=21505965
Score = 93.3 bits (102), Expect = 2e-13
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193
|| || || |||||||||||||||||||||||||| ||| | | || || | | | |
Sbjct 7417478 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGCTACA 7417419
Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253
||||| ||||||||| | |||||| | ||||| || ||| | ||||| | || |||||
Sbjct 7417418 CAACTGGAAGATGGACGTACTTTGTCTGATTACAACATTCAAAAGGAGTCCACTCTTCAT 7417359
Query 391254 TTAGTATTAAGACT 391267
| || || |||||
Sbjct 7417358 CTTGTGTTGAGACT 7417345
>seq3073
Length=9224021
Score = 93.3 bits (102), Expect = 2e-13
Identities = 169/246 (69%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGC---CAATAAACTGCATAA 96105
|||||| | |||||||| ||| || || || ||||| ||| | || | ||| | |
Sbjct 662555 TGCAATCTTTGGCACTAAGGGGTCATCTGGGTTTGGATCACCTAGCAGTGAAC---AAAT 662611
Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165
||||||||| |||||| ||| |||| || || ||| | | ||| |||||| |
Sbjct 662612 GGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAG 662671
Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225
|||||| || || | ||||||||||||||||||| ||| ||||| || ||
Sbjct 662672 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTT 662731
Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTC 96285
||| || || | || |||||| ||||||| |||| || |||||| || || |
Sbjct 662732 AGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTG 662791
Query 96286 ATAGGG 96291
||| ||
Sbjct 662792 ATATGG 662797
>seq3128
Length=41762041
Score = 89.7 bits (98), Expect = 2e-12
Identities = 340/529 (64%), Gaps = 10/529 (2%)
Strand=Plus/Plus
Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973
|||||||| || || | || ||||||| |||||||| || || | ||| | || ||
Sbjct 41155423 GCAATTGGCATCGACTTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCACGGCAAA 41155482
Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029
|| || || || || || ||||| || || || || || || | || || ||
Sbjct 41155483 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCC--CA--GCTACGTGGCGTT 41155538
Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088
||| || | || | || | ||| | || || || | | | ||| ||| ||
Sbjct 41155539 TACTGACACCGAGCGGCTGATCGGGGATGCGGCCAAGAACCA-GGTGGCCATGAATCCCC 41155597
Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148
| ||||| || | |||||| |||||| | || ||||| | || | ||| | ||| |
Sbjct 41155598 AGAACACCGTCTTTGATGCCAAACGTCTGATCGGCCGGAAGTTCAACGATCCTGTTGTGC 41155657
Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208
| ||| | || | | ||| | | || | ||| || ||| |||||| | |
Sbjct 41155658 AGTCAGATATGAAGCTTTGGCCTTTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTGG 41155717
Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268
|| || ||||| || | |||| |||| || || || || ||||| ||||| |
Sbjct 41155718 TGGTGTCCTACAAAGGGGAGAATAAAGCTTTCTACCCCGAGGAGATCTCATCAATGGTGC 41155777
Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328
| || || ||||| || || ||||| | | | || || | || |||| || |
Sbjct 41155778 TGACAAAGATGAAGGAGACTGCAGAGGCCTTTTTGGGCCACCCTATCACCAATGCCGTGA 41155837
Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388
| ||||| || || ||||||||||| | || || ||||| || || |||||||| |
Sbjct 41155838 TCACTGTGCCAGCCTATTTCAATGACTCTCAGCGCCAAGCCACCAAGGATGCAGGTGTGA 41155897
Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
| || || | ||||| || |||| || || || || ||||| |||||
Sbjct 41155898 TCGCAGGACTCAATGTGCTCAGAATCATCAACGAGCCCACAGCTGCTGC 41155946
>seq3061
Length=7642621
Score = 87.8 bits (96), Expect = 7e-12
Identities = 142/203 (70%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||| | ||||| || || || || || || || || | | |||| | ||
Sbjct 2174423 ATGCAGATTTTCAT-AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCA 2174481
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | | ||| | | || || || || |||||||||||||||||||||||||||
Sbjct 2174482 GACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAA 2174541
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || |||| ||||||||| | |||||| | ||||| ||
Sbjct 2174542 CAAAGGCTGATCTTTGCTGG----TAACTGGAAGATGGATGCACTTTGTCTGATTACAAC 2174597
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
||| | ||||| | || |||||
Sbjct 2174598 ATTCAAAAGGAGACCACTCTTCA 2174620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975638813123552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |