Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3106 86.0 8e-12 seq3018 86.0 8e-12 >seq3106 Length=22756556 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 102546 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 102605 ||||||||||||||||||||||| ||| || || ||||||||||||||||| || ||| Sbjct 217478 AATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGAAG 217537 Query 102606 AGGGTTGGGGACTAT 102620 ||||| || || ||| Sbjct 217538 AGGGTAGGCGAGTAT 217552 >seq3018 Length=3443724 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 102546 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 102605 ||||||||||||||||||||||| ||| || || ||||||||||||||||| || ||| Sbjct 3375934 AATCCATTTGACTTCATGGAGAATATTTCTCTGGAAGGGAAGACAAACTTCTTTGAGAAG 3375875 Query 102606 AGGGTTGGGGACTAT 102620 ||||| || || ||| Sbjct 3375874 AGGGTAGGCGAGTAT 3375860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718004823680