Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 158 3e-33
seq3063 129 1e-24
seq2965 129 1e-24
seq3061 125 2e-23
seq3105 122 2e-22
>seq3082
Length=10725151
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| |||||||||||||| || || ||||| || | ||||||
Sbjct 1251458 TCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1251399
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| |||||||| ||||| |||||||| | || ||||| |||||||||||
Sbjct 1251398 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCC 1251339
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||| || || || || ||| || |||||||||||||| ||||| || ||
Sbjct 1251338 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAG 1251279
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || |||| ||| || ||||| | |||||
Sbjct 1251278 AGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 154 bits (170), Expect = 3e-32
Identities = 162/212 (76%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| |||||||| || || ||||| || | |||||| | ||||||||
Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| || | || ||||| ||||||||||||||||| || ||
Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1251554
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| |||||||| ||||| | |||
Sbjct 1251553 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 1251497
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || ||||| | |||||
Sbjct 1251496 TTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 152 bits (168), Expect = 1e-31
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| |||||||||||||| || || ||||| || | ||||||
Sbjct 1251230 TCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1251171
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| |||||||| ||||| ||||| || | || ||||| || ||||||||
Sbjct 1251170 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCC 1251111
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || || || || || ||| || |||||||||||||| ||||| || |
Sbjct 1251110 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAA 1251051
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| | ||||| || |||| ||||| ||||| | ||||||||
Sbjct 1251050 GGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTT 1251007
>seq3063
Length=7952490
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||||||| ||||| || ||||||||||| ||||||| |||||||| | | ||| |
Sbjct 5877721 GAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCA 5877662
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| || |||||||| | ||||| || | ||| || || |||||||| |||||
Sbjct 5877661 TCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 5877602
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| ||||| || || ||| || || || || |||| || || || | |||||
Sbjct 5877601 CTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGT 5877542
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| | || || | ||||||||||| | |||||
Sbjct 5877541 GATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503
>seq2965
Length=1497097
Score = 129 bits (142), Expect = 1e-24
Identities = 165/226 (73%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| || |||||||| || || || ||||| || | || ||
Sbjct 1203879 TCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1203820
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||| ||||| |||||||| || |||||||| || | || ||||| || || |||||
Sbjct 1203819 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 1203760
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
|| |||||||| || || |||||| |||||||||||||| ||| || || ||
Sbjct 1203759 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACCTC 1203703
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||||| | ||||| || || | || |||||||| | ||||||
Sbjct 1203702 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | ||| |||||
Sbjct 1204094 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 1204035
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || ||||| || || ||||| || ||||||||
Sbjct 1204034 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203975
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| |||||||||||||| ||| || || || ||||| | |||
Sbjct 1203974 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACCTCGAGGGTGATGGTC 1203918
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || ||||| | |||||
Sbjct 1203917 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
>seq3061
Length=7642621
Score = 125 bits (138), Expect = 2e-23
Identities = 160/219 (73%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
|| ||||| ||||| |||||||||| ||| |||||||| |||||||| | | ||| |
Sbjct 2174636 GAATCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCA 2174577
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| || ||||| || ||||| || | |||||| || |||||||| |||||
Sbjct 2174576 TCCATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTC 2174521
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || || || || ||| || || || | ||||| ||| ||| | | |||||
Sbjct 2174520 CTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGT 2174461
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||||||||| || | ||||| ||| | |||||
Sbjct 2174460 GATGGTCTTTCCTGT-AAGGGTTTTATGAAAATCTGCAT 2174423
>seq3105
Length=21505965
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||||||| ||||| |||||||||||||| |||||||| |||||||| | | ||| |
Sbjct 7417344 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACG 7417403
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| || || || | || ||||| || | ||| || || |||||||| |||||
Sbjct 7417404 TCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 7417463
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || || || || ||| || || || || |||||| ||| || || |
Sbjct 7417464 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGAT 7417523
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
| ||||| ||||| || |||||||| ||
Sbjct 7417524 GATGGTCTTCCCTGTAAAGGTTTTTACAAA 7417553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109436907307448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |