Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 114 8e-21
seq3135 100 2e-16
seq3082 91.5 1e-13
seq3126 82.4 5e-11
>seq2965
Length=1497097
Score = 114 bits (126), Expect = 8e-21
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || | || |||||||| || || || || || || | |||||||| | ||
Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| ||||||||||| ||||| ||||| || || || | |||| || ||| |
Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 1203935
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| |||| ||| ||||| || || ||||| |||||||| |||||||||||
Sbjct 1203934 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
Score = 102 bits (112), Expect = 5e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || |||| | || |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 1203884 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1203825
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || | || |||||||| || || || || || || | |||||||| | ||
Sbjct 1203824 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203765
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| ||||||||||| ||||| ||||| || || || | |||| || ||| |
Sbjct 1203764 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 1203707
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| |||| ||| ||||| || || ||||| ||||| || |||||||||||
Sbjct 1203706 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658
>seq3135
Length=60673567
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||| |||||||| || | || | || ||||||||||| |||||||||
Sbjct 60530413 TCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAAT 60530354
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
| || | ||||||| | || | || |||||||| || || |||||| ||
Sbjct 60530353 ACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC--AT 60530296
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| | | || | || |||||| || | ||| ||||| || ||| | || |||||||
Sbjct 60530295 TCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTCA 60530236
Query 34969 CAAAGATCTGCAT 34981
| || ||||||||
Sbjct 60530235 CGAATATCTGCAT 60530223
>seq3082
Length=10725151
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| ||||| ||||| | || |||| |||||||| || || |||||
Sbjct 1251655 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1251596
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | || || || || ||||| || || ||
Sbjct 1251595 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 1251538
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| || ||| || || | ||| ||||| || || || || |||||||
Sbjct 1251537 TCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCA 1251478
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 1251477 CGAAGATCTGCAT 1251465
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || |||| | || |||| ||| | ||| |||||||| ||||| ||||| |||
Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| |||||||| || || ||||| || || | |||||||| | ||
Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| || || || || ||||| || || || || || | || | || ||| |
Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCA 1251286
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | || ||||| || || || ||||||||||| |||||||||||
Sbjct 1251285 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
>seq3126
Length=40167016
Score = 82.4 bits (90), Expect = 5e-11
Identities = 143/209 (68%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| ||||| || ||||| ||||| || || | | |||| |||
Sbjct 36688778 ACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCC 36688837
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| | ||| ||||| || | ||||| || | || | | |||||||||
Sbjct 36688838 AGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGG 36688897
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || |||||| | | |||| || ||| || |||| | | |||| ||
Sbjct 36688898 ATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACCTCGAGGATGGTGGTCTTA 36688950
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || |||||||| |||||||||||
Sbjct 36688951 CCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324621160852032
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