Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 318 7e-82
seq3040 107 2e-18
seq3018 82.4 9e-11
>seq3106
Length=22756556
Score = 318 bits (352), Expect = 7e-82
Identities = 643/941 (68%), Gaps = 21/941 (2%)
Strand=Plus/Minus
Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTT 18670
||||| ||| ||||||| | ||||||||||| | | | | ||| ||||||||
Sbjct 217614 TAAAAGTCAGCATCCAATGTGAAAGAATTCTC--CGTGGGGCTGGACATAACTCCCATCC 217557
Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730
| ||||| ||| | || || || |||||||| || || || || |||| || ||| |
Sbjct 217556 TCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCT 217497
Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790
|||| || ||||||||||||| || | | | | || || || | |||| | |
Sbjct 217496 CCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437
Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850
| || || || || || | || || ||||| | || || ||||| || || | |
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATA 18909
| || || | || || || || || || || || || | || || | ||| |||||
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGT-TGACGATAATC 217318
Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGA----AGATGTTTAAACATCAAACATGC 18965
| | | | ||| | | |||||| || || || || ||||||| || ||
Sbjct 217317 --TCCTTCACCCTCTGCTCT--GAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGC 217262
Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025
|| ||||| || || ||||| ||||| || || | |||||| ||||| || | || ||
Sbjct 217261 GAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGG 217202
Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085
||| ||||| | ||| || | |||||| || || ||||| || |||||||| || || ||
Sbjct 217201 CATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCC 217142
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145
||| || || ||||| || || | | ||| |||||| | || || || | ||||||
Sbjct 217141 TTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCA 217082
Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
|| ||||| || | |||||| ||||| ||||| ||||| || | ||| || ||
Sbjct 217081 GCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAG 217025
Query 19206 ATACATACGCTCATCTGTA-TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264
|| | || |||| | ||||| | ||| | ||| || | | |||||||||||| |
Sbjct 217024 GAACTCCCTTTC-TCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAG 216966
Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324
||||||| ||||| || || ||||| || ||||| ||||| | || ||||| || || |
Sbjct 216965 AATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAA 216906
Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384
|||| | || | || |||||||| ||||| ||||| ||||| || || ||||| |
Sbjct 216905 CTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGA 216846
Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTA 19443
| || | || ||| ||||| | | | || || | | || | | || ||| | | |
Sbjct 216845 AAGCCAGAACGTGTGATATAAAGTATCTCTCCTC-GGGCTTCAGGGCTTCCCAGTGCTGA 216787
Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503
|| ||||| || | ||| || || || | |||||||| || ||||| ||||| ||||||
Sbjct 216786 ATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATAC 216727
Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|| | ||| || ||| | |||| ||||| || || |||||
Sbjct 216726 ATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || ||||| ||||| ||||| || ||
Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 3956827 TTTCTTACACCATA 3956814
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| |||||||| || | || ||| |||| || | |||||| || |
Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||||||||||||||| | | | |
Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGTACAGTTT 3960624
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| ||||| ||||||| ||| || | ||| || ||
Sbjct 3960623 TCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTTCAGGTCATCAGG 3960575
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/216 (68%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
|||||| |||| ||||| || | ||| |||| ||| ||||| | || || || ||
Sbjct 3951818 TCCTTTGCTTACTGGAGAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATC 3951759
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
||| || ||||||| || | |||||| || || ||||| |||| | ||||| |
Sbjct 3951758 ACAGCTGGCTTCCAGGGCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTG 3951699
Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719
||||||| ||||||||||| || | |||||||| ||||| ||
Sbjct 3951698 GGCTTCTGGACTCTCAAAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTAC 3951639
Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755
|||||| ||||| || | |||| |||||| || ||
Sbjct 3951638 ACCAATTCCAATGGGGCGATGACGTTTATTTGATAA 3951603
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| |||||| ||||||| |||| || | | ||
Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
||||||||||| ||| |||||| || || || || || | |||||| | ||| |||
Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| ||| |||||||||
Sbjct 3936093 ATATGTTGCGGTCTTTCA 3936076
>seq3018
Length=3443724
Score = 82.4 bits (90), Expect = 9e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|||||| | ||| | ||| || | | |||||||||||| |||||||| ||||| || ||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| || ||||| ||||| | || ||||| || || |||||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562086709124160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |