Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3106 318 7e-82 seq3040 107 2e-18 seq3018 82.4 9e-11 >seq3106 Length=22756556 Score = 318 bits (352), Expect = 7e-82 Identities = 643/941 (68%), Gaps = 21/941 (2%) Strand=Plus/Minus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTT 18670 ||||| ||| ||||||| | ||||||||||| | | | | ||| |||||||| Sbjct 217614 TAAAAGTCAGCATCCAATGTGAAAGAATTCTC--CGTGGGGCTGGACATAACTCCCATCC 217557 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 | ||||| ||| | || || || |||||||| || || || || |||| || ||| | Sbjct 217556 TCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCT 217497 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| || ||||||||||||| || | | | | || || || | |||| | | Sbjct 217496 CCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | || || || || || | || || ||||| | || || ||||| || || | | Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATA 18909 | || || | || || || || || || || || || | || || | ||| ||||| Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGT-TGACGATAATC 217318 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGA----AGATGTTTAAACATCAAACATGC 18965 | | | | ||| | | |||||| || || || || ||||||| || || Sbjct 217317 --TCCTTCACCCTCTGCTCT--GAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGC 217262 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 || ||||| || || ||||| ||||| || || | |||||| ||||| || | || || Sbjct 217261 GAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGG 217202 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| ||||| | ||| || | |||||| || || ||||| || |||||||| || || || Sbjct 217201 CATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCC 217142 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || ||||| || || | | ||| |||||| | || || || | |||||| Sbjct 217141 TTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCA 217082 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| || | |||||| ||||| ||||| ||||| || | ||| || || Sbjct 217081 GCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAG 217025 Query 19206 ATACATACGCTCATCTGTA-TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 || | || |||| | ||||| | ||| | ||| || | | |||||||||||| | Sbjct 217024 GAACTCCCTTTC-TCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAG 216966 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 ||||||| ||||| || || ||||| || ||||| ||||| | || ||||| || || | Sbjct 216965 AATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAA 216906 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | || | || |||||||| ||||| ||||| ||||| || || ||||| | Sbjct 216905 CTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGA 216846 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTA 19443 | || | || ||| ||||| | | | || || | | || | | || ||| | | | Sbjct 216845 AAGCCAGAACGTGTGATATAAAGTATCTCTCCTC-GGGCTTCAGGGCTTCCCAGTGCTGA 216787 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 || ||||| || | ||| || || || | |||||||| || ||||| ||||| |||||| Sbjct 216786 ATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATAC 216727 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || | ||| || ||| | |||| ||||| || || ||||| Sbjct 216726 ATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 3956827 TTTCTTACACCATA 3956814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||||| || | || ||| |||| || | |||||| || | Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||||||||||||||| | | | | Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGTACAGTTT 3960624 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| ||||| ||||||| ||| || | ||| || || Sbjct 3960623 TCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTTCAGGTCATCAGG 3960575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/216 (68%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||||| || | ||| |||| ||| ||||| | || || || || Sbjct 3951818 TCCTTTGCTTACTGGAGAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATC 3951759 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| || ||||||| || | |||||| || || ||||| |||| | ||||| | Sbjct 3951758 ACAGCTGGCTTCCAGGGCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTG 3951699 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||||||| ||||||||||| || | |||||||| ||||| || Sbjct 3951698 GGCTTCTGGACTCTCAAAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTAC 3951639 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755 |||||| ||||| || | |||| |||||| || || Sbjct 3951638 ACCAATTCCAATGGGGCGATGACGTTTATTTGATAA 3951603 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| |||| || | | || Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| |||||| || || || || || | |||||| | ||| ||| Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 3936093 ATATGTTGCGGTCTTTCA 3936076 >seq3018 Length=3443724 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | ||| | ||| || | | |||||||||||| |||||||| ||||| || || Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || ||||| ||||| | || ||||| || || ||||| Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086709124160