Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3108 134 1e-25 seq3099 134 1e-25 seq3124 125 6e-23 seq3114 122 7e-22 seq3129 120 2e-21 seq3134 118 9e-21 seq3063 105 5e-17 seq3082 102 7e-16 seq3143 100 2e-15 seq3105 98.7 8e-15 seq2997 93.3 3e-13 seq3116 91.5 1e-12 seq3061 86.0 5e-11 >seq3108 Length=23989115 Score = 134 bits (148), Expect = 1e-25 Identities = 336/501 (67%), Gaps = 21/501 (4%) Strand=Plus/Minus Query 550045 TGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTC 550104 ||| ||||| || || ||||| |||||||| | || || |||||| ||| || || Sbjct 13305056 TGGAAAAGTGGAGATCATTGC-AATGATCAGGAAAATCAAATCACTCCAAGTTACGTCTC 13304998 Query 550105 TTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT-- 550162 | | | | || ||| | || ||||| |||||| |||||| ||| ||| Sbjct 13304997 TGTAATTAACACCGAAGGACTGATTCAAGATGCTGCAAAAAATCAAG----TGGCAATAA 13304942 Query 550163 --CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220 || |||| || |||| |||| || | | | | |||| | || ||| ||||| | | Sbjct 13304941 AACCAGCCAACACAGTTTTCAATGCCAAGCATCTGACTGGATGTAGATTTCATGATGCTA 13304882 Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAA-AACCT 550279 ||| ||| | ||||||||||||||||| ||| | || |||| | || || | Sbjct 13304881 TTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGAGGCAGGCCCAAAGT 13304822 Query 550280 TATATT-GAAGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCAT 550337 | | | ||| ||| | || || ||| | || | ||| | || | |||| Sbjct 13304821 TCCAGTAGAA--TACAAAGGAGAGAC-----AAAGAGCTTCTGTCCAAAGAAAGTATCAT 13304769 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACG 550396 ||||||| | | || ||||| ||| || |||| | |||| |||| ||||| Sbjct 13304768 CTATGGTGCTGACAAAGATGAAGGAAATTGCAGAAGCTTATCTTGGG-AAGACTGTTACC 13304710 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 |||| || | |||| ||||| || ||||||||||| || |||| || || |||| | Sbjct 13304709 AATGCTGTGGTCACTGAGCCAGCTTACTTTAATGACTCTCAGTGTCAGGCAACCAAAGTT 13304650 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| |||||||| |||||||| || | ||||||||||| || || |||||||| Sbjct 13304649 GCTGGAAACATTGCTGGTCTTAATGTATTTAGAATTATCAATGAGCCAACAGCTGCTGCT 13304590 Query 550517 CTTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 13304589 GTTGCCTATGGCCTAGACAAA 13304569 >seq3099 Length=15920349 Score = 134 bits (148), Expect = 1e-25 Identities = 376/567 (66%), Gaps = 34/567 (6%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| | ||| |||| || || ||||||| |||||| || || | Sbjct 2306302 TGTGTGGGTGTCTTGCAGCATGG-------GAGATGATTGCCAGTGATCAGGGAAATCAA 2306354 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || |||||| ||| ||| || || |||||| |||| |||| ||||| Sbjct 2306355 ACCACTCCAAGTTACAGCACTT-CATTGACACTGAA-------TTGGAGATGTTACAAAA 2306406 Query 550145 TATCAAGC--CACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 |||||| || || || || ||||| || |||||||||| || || | |||||| Sbjct 2306407 AATCAAGTGGCAATG--AACCCCACCAACACAGTTTTTGATGCCAAGTGTCTTATTGGAT 2306464 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | || |||| |||| | ||| ||| | ||||||||||| ||||| ||| || | | Sbjct 2306465 GTAGGTTTAGTGATGCTGTTGTCCAGTCTGATATGAAGCACTGGCCCTTCATGATGGCAA 2306524 Query 550263 ATGTTTC---TGGAAAAC--CTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATT 550317 ||| | | ||| | || | | ||| ||| | |||| | ||| ||| Sbjct 2306525 ATGATGCAGCTGGCCTAGGGCTCAAGTAGAA--TACAAA-GAAGAGAC----AAAGAATG 2306577 Query 550318 T-TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTT 550376 | | ||||| | | ||||||||||| | | || ||||| |||| | |||| Sbjct 2306578 TCTTTCCAGAGGACGTATCATCTATGGTGCTGACAAAGATGAAGGAAACTGAAGAAGCTT 2306637 Query 550377 TTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | |||| |||| |||| ||| ||| | ||||| ||||| || ||||||||| Sbjct 2306638 ATCTTGGG-AAGACTGTTATCATTGCTGTAGTTACTGTGCCAGCTTACTTTAATGACCGT 2306696 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || | ||| || || ||| |||||| | |||||||| |||||||| ||| | |||||| Sbjct 2306697 CATCATCAGGCAACCAAAAATGCTGCAGCCATTGCTGGTCTTAATGTACTTAGAATTATC 2306756 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTT 550555 ||||| || || | |||||| |||| ||||| | || ||| | | || ||| Sbjct 2306757 AATGAGCCAACAGATGCTGCTATTGCCTATGGCTTAGAGAAAAAGATTGGAGCTGAAAGA 2306816 Query 550556 AATGTACTCATCTTTGATTGTGGAGGT 550582 ||||| || || ||| ||| |||||| Sbjct 2306817 AATGTGCTGATTTTTTATTTAGGAGGT 2306843 >seq3124 Length=37078832 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||| ||||| |||||||||||||| || || || ||||| Sbjct 25401446 GTTACCAATGCTGTGGTTACTGTGCCAGCTTATTTTAATGACTCTCAGCGCCAGGCTACC 25401505 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||| |||||||| ||| | ||||||||||| || || ||| Sbjct 25401506 AAAGATGCTGGGACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCT 25401565 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 25401566 GCTGCTATTGCCTATGG 25401582 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||| | || ||||| || ||||| ||||| | || |||| || Sbjct 25400707 GCTGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 25400766 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||||||||| || || |||| |||||| |||||| ||||||| Sbjct 25400767 GTGGAGATCATTGCCAATGATCAGGGAAATCGAACCACTCCAAGTTATGTCGCTTTCACT 25400826 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || || |||| | |||| ||||| |||||| | |||| Sbjct 25400827 GACACCGAACGACTGATTGGGGATGCTGCAAAAAACCAAG 25400866 Score = 91.5 bits (100), Expect = 1e-12 Identities = 227/345 (66%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| | || ||||| | ||||| || ||| |||| || || | || || || | || Sbjct 25401887 AGCTGTCCGCCGTCTTCGCACTGCATGTGAACGAGCTAAGAGAACCCTCTCTTCCAGCAC 25401946 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 ||| ||| |||||| | ||||| | | ||| || || || | |||| | ||| | Sbjct 25401947 CCAAGCCAGTATTGAGATTGATTCCCTCTATGAAGGGATCGACTTCTATACCTCCATTAC 25402006 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 | || ||||||||| | | |||| || ||| | || | || || || || Sbjct 25402007 TCGTGCTCGATTTGAAGAGCTGAATGCTGACCTGTTTCGTGGCACTCTAGACCCTGTGGA 25402066 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | | | | ||||| | ||| |||| || || | | ||||| ||||| | || || Sbjct 25402067 GAAGGCTCTGCGAGATGCTAAGCTTGACAAGTCACAGATCCATGACATTGTCTTGGTGGG 25402126 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||| ||||| | ||||| || || | || | || || |||||||| ||| | Sbjct 25402127 TGGTTCTACTCGTATTCCCAAGATCCAGAAACTTCTACAAGATTTCTTCAATGGAAAAGA 25402186 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 ||| ||| | ||| | || || || ||||||||||| |||||||| Sbjct 25402187 ATTGAATAAGAGTATCAACCCTGACGAGGCTGTTGCTTATGGTGC 25402231 >seq3114 Length=26790417 Score = 122 bits (134), Expect = 7e-22 Identities = 350/529 (66%), Gaps = 21/529 (4%) Strand=Plus/Minus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | || ||||| || ||||| ||||| | || |||| ||||| || || ||| Sbjct 7928166 GATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGGAGATCATT 7928107 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 ||||||||||| | || ||| || ||| |||||| |||||| || || || Sbjct 7928106 GCCAATGATCATAGAAATTGAATCACCCCAAGTTATGTCGTTTTCACTGACAC----CAA 7928051 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACCAATACTATTTTTG 550181 | ||| || || |||||| ||||| || || || || | |||||| |||||| Sbjct 7928050 ATGACTGGAGACGCTGCAAAAAATCAAATAGCAATG--AACCCCATCAATACAGTTTTTG 7927993 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 |||| || | | |||||| | || ||| ||||| | ||| ||| | |||||||||| Sbjct 7927992 ATGCCAAGTATCTGATTGGATGTAGATTTGATGATGCTGTTGTCCAGTCTGATATGAAGC 7927933 Query 550242 ATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAG 550301 | |||| ||| | || || | | || | || | || ||| | ||| Sbjct 7927932 GTCGGCCCTTCATGGTGGTGAACAATGCAGGCAGGCCCAAGGTTCAAGTAGAATACAAAG 7927873 Query 550302 GATCTGTTAAACAA--TTTTCACCAGAACAAATTTCA-TCTATGGTTTTAATGAAAATGA 550358 || | || | || | ||||| | | ||| | | |||| | | || ||| Sbjct 7927872 GA-----GAGACGAGCTTCTATCCAGAGGAGGTGTCATTTTTTGGTGCTGACAAAGGTGA 7927818 Query 550359 AACAAA-CAGCCAGTGCTTT-TGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 | ||| || ||| ||| | |||| | ||||| |||| || | ||||| || Sbjct 7927817 AGGAAATCA--CAGAAATTTATCTTGGGAACACTGTTACCAATGCTGTGGTTACTGTGCC 7927760 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||| || |||||||| || || | ||| || || | |||||||||| ||||||||| || Sbjct 7927759 AGCTTACTTTAATGATTCTCAGCATCAGGCAACCACAGATGCTGGAACTATTGCTGGTCT 7927700 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||| ||| | ||||||||| || | || |||||||| |||| ||| Sbjct 7927699 TAATGTACTTAGAATTATCAAT-AAGCAACAGCTGCTGCTATTGCCTAT 7927652 >seq3129 Length=43247874 Score = 120 bits (132), Expect = 2e-21 Identities = 378/582 (65%), Gaps = 44/582 (8%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||| | ||||| | || |||| ||||| || || |||||||||||||| || || | Sbjct 28182719 TGTATGGGTGTCTCCCAGCATGGAAAAGTGGAGATAATTGCCAATGATCAGGGAAATCAA 28182778 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAA--------------ACTG---AACATTTAG 550127 || |||||| |||||| ||||||| || |||| |||| | Sbjct 28182779 ACCACTCCAAGTTATGTCGCTTTCACTAAAGATTGATCAGAGATACTGCAAAACAACTCA 28182838 Query 550128 TTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTA 550187 | | ||||| |||||| |||||| | | || || ||||| || ||||||||| | Sbjct 28182839 TCAGAGATGCTGCAAAAAATCAAGTGGCAGTGAACCCCACCAACACAGCTTTTGATGCCA 28182898 Query 550188 AACGTTTAATTGGAAGAAGTTTTAATGATT---CGACTGTTCAGGCAGATATGAAGCATT 550244 ||| | | |||||| | || | | ||||| | | ||| ||| | | | ||||||||| Sbjct 28182899 AACATCTGATTGGACGTAGATATGATGATGATGCTATTGTCCAGTCTGGTGTGAAGCATT 28182958 Query 550245 GGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGAT 550304 |||| || | || |||| | | || | || ||| | ||| | || || Sbjct 28182959 GGCCCTTTATGGTGGTGAATGATGCAGGCAGGCCC-------AAGGT--TCAAGTAGAAT 28183009 Query 550305 -CTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACA 550362 | | | | | | ||| ||||| | | || |||| || | | || |||| | Sbjct 28183010 ACAGAGAGAAAGAGTTTGTCCAGAGAAGGTGTCTTCTACAGTGCTGACAAAGGTGAAGGA 28183069 Query 550363 AACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCAT 550421 ||| || || | | |||| |||| ||||| |||| || | |||| ||||| | Sbjct 28183070 AACTGCAGACGCGTATCTTGGG-AAGACTGTTACCAATGCTGTGGTTACTGGGCCAGCTT 28183128 Query 550422 ATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATG 550481 | ||||||||||| || ||||| | || |||||||||||| |||||||| ||||||| Sbjct 28183129 ACTTTAATGACTCTCAGCGTCAGGA-ACCAAAGATGCTGGAACCATTGCTGGTCTTAATG 28183187 Query 550482 TTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATA 550541 | ||| | ||||||||||| ||||| |||| ||||| | || ||| | Sbjct 28183188 TACTTGGAATTATCAATGA----------GCTGCTATTGCTTATGGCTTAGACAAAAAGG 28183237 Query 550542 ATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGTA 550583 || ||| |||||||| || ||||||| ||||||| Sbjct 28183238 TTGGAGTTGAAAGAAATGTACTGATTTTTGATTTAGGAGGTA 28183279 >seq3134 Length=59225736 Score = 118 bits (130), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 550024 TTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAG 550083 |||||| ||||| | || | | ||||| || || || |||||||||| || || | Sbjct 50879564 TTGTGTGGGTGTCTTCCAGCACTGAAAAGTGGAGATAAT--CCAATGATCAGGGAAATTG 50879621 Query 550084 AACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| |||| |||| | ||||| | | ||| |||| | |||| ||||| ||||| Sbjct 50879622 AACTATTCCAAGTTATACTGCTTTCGCCAACACTAAACAACTGATTGGAGATGCTGCAAA 50879681 Query 550144 ATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG 550203 | |||||| || || || ||||| || |||| |||| || | | | |||||| | Sbjct 50879682 AAATCAAGTGACAACGAACCCAACCAACACAGTTTTCAATGCCAAGCATCTTATTGGATG 50879741 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 || ||| ||||| | ||||||| | ||||||||||||||||| ||| Sbjct 50879742 TAGCTTTTATGATGCTGTTGTTCAGTCTGATATGAAGCATTGGCCCTTC 50879790 >seq3063 Length=7952490 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||| || || ||| ||||| ||| |||||||||| | ||| | | ||||| Sbjct 5877711 ACAAGATGGAGAGTGGACTCCCTTTG--AATGTTGTAATCAGACAAAGTGCATCCATCTT 5877654 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || || |||||||||||||||||||||||||| ||||||| Sbjct 5877653 CCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTT 5877594 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || | | | | | | ||| || | || Sbjct 5877593 GGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCC 5877534 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| ||||| |||||||| ||||| Sbjct 5877533 TCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503 >seq3082 Length=10725151 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| || || || || ||| ||||| || ||||| |||| ||||| Sbjct 1251686 CCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1251627 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || || || ||||| || || || ||||| ||||||||||| || Sbjct 1251626 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCC 1251567 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||||||||| || || || || || |||||| || ||| || | | || ||| | Sbjct 1251566 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTG-GGCTCCACTTCCA 1251508 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || ||||| || ||||| Sbjct 1251507 GGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 Score = 95.1 bits (104), Expect = 1e-13 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || || || || || || || || ||| | | ||| || ||||| |||| |||| Sbjct 1251457 CTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGAG 1251400 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || || ||||| ||||| || ||||| ||||||||||| | Sbjct 1251399 TGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGC 1251340 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||||||||| || || || || || |||||| || || || | | || || Sbjct 1251339 CTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTG-GGCTCCACCTCC 1251281 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || ||||| ||||| || ||||| || ||||| Sbjct 1251280 AGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 >seq3143 Length=88675666 Score = 100 bits (110), Expect = 2e-15 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||||||||| ||||| ||||||| || | ||| || || |||||||||| | ||| Sbjct 45737991 ACTGTACCAGCTTATTT-AATGACTTTCAGCATCAGGCAACCAAAGATGCTGAAACCATT 45737933 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| |||| ||| || | |||||||||||||| || |||||||| |||| ||| Sbjct 45737932 GCTGGTCTTATTGTACTCAGAATTATCAATGAACCAACAGCTGCTGCTATTGCTTAT 45737876 Score = 89.7 bits (98), Expect = 4e-12 Identities = 184/266 (69%), Gaps = 11/266 (4%) Strand=Plus/Minus Query 552120 ATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT---TAAGTTCT 552176 ||||| || || ||||| ||||| || || || || || | ||| | |||| || Sbjct 45737506 ATTGTCCTGGTGGGTGGTTCTACCAGTATCCCCAAGATCCA-GAAGCTTCTATAAGA-CT 45737449 Query 552177 TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGT 552236 | ||||| ||| ||| |||| ||| | || | || | ||||||||||||| |||||| Sbjct 45737448 T-TTTCA-TGGAAAAGAATTGAATAAGAGGATCAACCTTGATGAGGCTGTTGATTATGGT 45737391 Query 552237 GCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTA--CAAAATATTG 552294 || || |||| ||| | | ||| |||| ||||| | |||||| ||| || | Sbjct 45737390 GCAGCTGTTCAGGCAACCAATCTATCTG--CAAACAAGTCTGAAACTATTCAAGATTTGC 45737333 Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 | || | ||||| |||||||| ||| ||||| | |||| | ||| || | |||||| Sbjct 45737332 TGCTCTTGGATGTCACTCCTCTTTCTGTTGGTATTGAAATTGCTGGTGGAGTCATGACTG 45737273 Query 552355 ATCTTATCGATAGAAATACTACTATT 552380 || ||| | | |||||||| ||| Sbjct 45737272 TCCTCATCAAGGGCAATACTACCATT 45737247 >seq3105 Length=21505965 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||||||| || ||| |||| ||| |||||||||| | ||| | | ||||| Sbjct 7417354 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAATCAGACAAAGTACGTCCATCTT 7417411 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | |||||| | | ||||| || || |||||||||||||||||||||||||| ||||| | Sbjct 7417412 CCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 7417471 Query 563384 GAATTTT 563390 | || || Sbjct 7417472 GGATCTT 7417478 >seq2997 Length=2481227 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/127 (78%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG-AATCTT 563323 ||||||||||| || | | |||| | ||| |||||| ||| | ||| | | |||||| Sbjct 411694 ACAAGATGAAGAGTGAACTCCTTTTG-AATGTTGTAACCAGACAAAGTACATCCAATCTT 411636 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || || | |||||||||||||||||||||||| ||||| | Sbjct 411635 CCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 411576 Query 563384 GAATTTT 563390 | || || Sbjct 411575 GGATCTT 411569 >seq3116 Length=27942054 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | |||||||| || || |||||||| | ||| | ||||| || Sbjct 8942874 GTTACTCATGCAGTCGTTACTGTACCTGCCTACTTTAATGATGCTCAAAGGCAAGCAACC 8942933 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| ||||||||||| |||||| | | || |||||||| || Sbjct 8942934 AAAGATGCTGGAACAATTGCTGGACTGAATGTTATGAGAATCATCAATGAGCC 8942986 >seq3061 Length=7642621 Score = 86.0 bits (94), Expect = 5e-11 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || ||||||||||| || | || || ||| |||||||||| | ||| | | |||| Sbjct 2174629 AGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCT 2174570 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || |||| || ||||| || || ||||| |||||||||||||||||||| ||||| Sbjct 2174569 TCCAGTTA----CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCC 2174514 Query 563383 TGAATTTT 563390 || || || Sbjct 2174513 TGGATCTT 2174506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029129731100560