Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 134 1e-25
seq3099 134 1e-25
seq3124 125 6e-23
seq3114 122 7e-22
seq3129 120 2e-21
seq3134 118 9e-21
seq3063 105 5e-17
seq3082 102 7e-16
seq3143 100 2e-15
seq3105 98.7 8e-15
seq2997 93.3 3e-13
seq3116 91.5 1e-12
seq3061 86.0 5e-11
>seq3108
Length=23989115
Score = 134 bits (148), Expect = 1e-25
Identities = 336/501 (67%), Gaps = 21/501 (4%)
Strand=Plus/Minus
Query 550045 TGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTC 550104
||| ||||| || || ||||| |||||||| | || || |||||| ||| || ||
Sbjct 13305056 TGGAAAAGTGGAGATCATTGC-AATGATCAGGAAAATCAAATCACTCCAAGTTACGTCTC 13304998
Query 550105 TTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT-- 550162
| | | | || ||| | || ||||| |||||| |||||| ||| |||
Sbjct 13304997 TGTAATTAACACCGAAGGACTGATTCAAGATGCTGCAAAAAATCAAG----TGGCAATAA 13304942
Query 550163 --CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220
|| |||| || |||| |||| || | | | | |||| | || ||| ||||| | |
Sbjct 13304941 AACCAGCCAACACAGTTTTCAATGCCAAGCATCTGACTGGATGTAGATTTCATGATGCTA 13304882
Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAA-AACCT 550279
||| ||| | ||||||||||||||||| ||| | || |||| | || || |
Sbjct 13304881 TTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGAGGCAGGCCCAAAGT 13304822
Query 550280 TATATT-GAAGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCAT 550337
| | | ||| ||| | || || ||| | || | ||| | || | ||||
Sbjct 13304821 TCCAGTAGAA--TACAAAGGAGAGAC-----AAAGAGCTTCTGTCCAAAGAAAGTATCAT 13304769
Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACG 550396
||||||| | | || ||||| ||| || |||| | |||| |||| |||||
Sbjct 13304768 CTATGGTGCTGACAAAGATGAAGGAAATTGCAGAAGCTTATCTTGGG-AAGACTGTTACC 13304710
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|||| || | |||| ||||| || ||||||||||| || |||| || || |||| |
Sbjct 13304709 AATGCTGTGGTCACTGAGCCAGCTTACTTTAATGACTCTCAGTGTCAGGCAACCAAAGTT 13304650
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
|||||| |||||||| |||||||| || | ||||||||||| || || ||||||||
Sbjct 13304649 GCTGGAAACATTGCTGGTCTTAATGTATTTAGAATTATCAATGAGCCAACAGCTGCTGCT 13304590
Query 550517 CTTGCATATGGACTTGATAAA 550537
|||| ||||| || || |||
Sbjct 13304589 GTTGCCTATGGCCTAGACAAA 13304569
>seq3099
Length=15920349
Score = 134 bits (148), Expect = 1e-25
Identities = 376/567 (66%), Gaps = 34/567 (6%)
Strand=Plus/Plus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
||||| ||||| | ||| |||| || || ||||||| |||||| || || |
Sbjct 2306302 TGTGTGGGTGTCTTGCAGCATGG-------GAGATGATTGCCAGTGATCAGGGAAATCAA 2306354
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144
|| |||||| ||| ||| || || |||||| |||| |||| |||||
Sbjct 2306355 ACCACTCCAAGTTACAGCACTT-CATTGACACTGAA-------TTGGAGATGTTACAAAA 2306406
Query 550145 TATCAAGC--CACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202
|||||| || || || || ||||| || |||||||||| || || | ||||||
Sbjct 2306407 AATCAAGTGGCAATG--AACCCCACCAACACAGTTTTTGATGCCAAGTGTCTTATTGGAT 2306464
Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262
| || |||| |||| | ||| ||| | ||||||||||| ||||| ||| || | |
Sbjct 2306465 GTAGGTTTAGTGATGCTGTTGTCCAGTCTGATATGAAGCACTGGCCCTTCATGATGGCAA 2306524
Query 550263 ATGTTTC---TGGAAAAC--CTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATT 550317
||| | | ||| | || | | ||| ||| | |||| | ||| |||
Sbjct 2306525 ATGATGCAGCTGGCCTAGGGCTCAAGTAGAA--TACAAA-GAAGAGAC----AAAGAATG 2306577
Query 550318 T-TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTT 550376
| | ||||| | | ||||||||||| | | || ||||| |||| | ||||
Sbjct 2306578 TCTTTCCAGAGGACGTATCATCTATGGTGCTGACAAAGATGAAGGAAACTGAAGAAGCTT 2306637
Query 550377 TTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435
| |||| |||| |||| ||| ||| | ||||| ||||| || |||||||||
Sbjct 2306638 ATCTTGGG-AAGACTGTTATCATTGCTGTAGTTACTGTGCCAGCTTACTTTAATGACCGT 2306696
Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495
|| | ||| || || ||| |||||| | |||||||| |||||||| ||| | ||||||
Sbjct 2306697 CATCATCAGGCAACCAAAAATGCTGCAGCCATTGCTGGTCTTAATGTACTTAGAATTATC 2306756
Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTT 550555
||||| || || | |||||| |||| ||||| | || ||| | | || |||
Sbjct 2306757 AATGAGCCAACAGATGCTGCTATTGCCTATGGCTTAGAGAAAAAGATTGGAGCTGAAAGA 2306816
Query 550556 AATGTACTCATCTTTGATTGTGGAGGT 550582
||||| || || ||| ||| ||||||
Sbjct 2306817 AATGTGCTGATTTTTTATTTAGGAGGT 2306843
>seq3124
Length=37078832
Score = 125 bits (138), Expect = 6e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | ||||| ||||| |||||||||||||| || || || |||||
Sbjct 25401446 GTTACCAATGCTGTGGTTACTGTGCCAGCTTATTTTAATGACTCTCAGCGCCAGGCTACC 25401505
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
||||||||||| |||||||| |||||||| ||| | ||||||||||| || || |||
Sbjct 25401506 AAAGATGCTGGGACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCT 25401565
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 25401566 GCTGCTATTGCCTATGG 25401582
Score = 91.5 bits (100), Expect = 1e-12
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||| | || || ||| | || ||||| || ||||| ||||| | || |||| ||
Sbjct 25400707 GCTGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 25400766
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || |||||||||||||| || || |||| |||||| |||||| |||||||
Sbjct 25400767 GTGGAGATCATTGCCAATGATCAGGGAAATCGAACCACTCCAAGTTATGTCGCTTTCACT 25400826
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151
|| || |||| | |||| ||||| |||||| | ||||
Sbjct 25400827 GACACCGAACGACTGATTGGGGATGCTGCAAAAAACCAAG 25400866
Score = 91.5 bits (100), Expect = 1e-12
Identities = 227/345 (66%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953
|||| | || ||||| | ||||| || ||| |||| || || | || || || | ||
Sbjct 25401887 AGCTGTCCGCCGTCTTCGCACTGCATGTGAACGAGCTAAGAGAACCCTCTCTTCCAGCAC 25401946
Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013
||| ||| |||||| | ||||| | | ||| || || || | |||| | ||| |
Sbjct 25401947 CCAAGCCAGTATTGAGATTGATTCCCTCTATGAAGGGATCGACTTCTATACCTCCATTAC 25402006
Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073
| || ||||||||| | | |||| || ||| | || | || || || ||
Sbjct 25402007 TCGTGCTCGATTTGAAGAGCTGAATGCTGACCTGTTTCGTGGCACTCTAGACCCTGTGGA 25402066
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
| | | | ||||| | ||| |||| || || | | ||||| ||||| | || ||
Sbjct 25402067 GAAGGCTCTGCGAGATGCTAAGCTTGACAAGTCACAGATCCATGACATTGTCTTGGTGGG 25402126
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193
||| ||||| | ||||| || || | || | || || |||||||| ||| |
Sbjct 25402127 TGGTTCTACTCGTATTCCCAAGATCCAGAAACTTCTACAAGATTTCTTCAATGGAAAAGA 25402186
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238
||| ||| | ||| | || || || ||||||||||| ||||||||
Sbjct 25402187 ATTGAATAAGAGTATCAACCCTGACGAGGCTGTTGCTTATGGTGC 25402231
>seq3114
Length=26790417
Score = 122 bits (134), Expect = 7e-22
Identities = 350/529 (66%), Gaps = 21/529 (4%)
Strand=Plus/Minus
Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063
||| | || ||||| || ||||| ||||| | || |||| ||||| || || |||
Sbjct 7928166 GATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGGAGATCATT 7928107
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
||||||||||| | || ||| || ||| |||||| |||||| || || ||
Sbjct 7928106 GCCAATGATCATAGAAATTGAATCACCCCAAGTTATGTCGTTTTCACTGACAC----CAA 7928051
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACCAATACTATTTTTG 550181
| ||| || || |||||| ||||| || || || || | |||||| ||||||
Sbjct 7928050 ATGACTGGAGACGCTGCAAAAAATCAAATAGCAATG--AACCCCATCAATACAGTTTTTG 7927993
Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241
|||| || | | |||||| | || ||| ||||| | ||| ||| | ||||||||||
Sbjct 7927992 ATGCCAAGTATCTGATTGGATGTAGATTTGATGATGCTGTTGTCCAGTCTGATATGAAGC 7927933
Query 550242 ATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAG 550301
| |||| ||| | || || | | || | || | || ||| | |||
Sbjct 7927932 GTCGGCCCTTCATGGTGGTGAACAATGCAGGCAGGCCCAAGGTTCAAGTAGAATACAAAG 7927873
Query 550302 GATCTGTTAAACAA--TTTTCACCAGAACAAATTTCA-TCTATGGTTTTAATGAAAATGA 550358
|| | || | || | ||||| | | ||| | | |||| | | || |||
Sbjct 7927872 GA-----GAGACGAGCTTCTATCCAGAGGAGGTGTCATTTTTTGGTGCTGACAAAGGTGA 7927818
Query 550359 AACAAA-CAGCCAGTGCTTT-TGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416
| ||| || ||| ||| | |||| | ||||| |||| || | ||||| ||
Sbjct 7927817 AGGAAATCA--CAGAAATTTATCTTGGGAACACTGTTACCAATGCTGTGGTTACTGTGCC 7927760
Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476
||| || |||||||| || || | ||| || || | |||||||||| ||||||||| ||
Sbjct 7927759 AGCTTACTTTAATGATTCTCAGCATCAGGCAACCACAGATGCTGGAACTATTGCTGGTCT 7927700
Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
|||||| ||| | ||||||||| || | || |||||||| |||| |||
Sbjct 7927699 TAATGTACTTAGAATTATCAAT-AAGCAACAGCTGCTGCTATTGCCTAT 7927652
>seq3129
Length=43247874
Score = 120 bits (132), Expect = 2e-21
Identities = 378/582 (65%), Gaps = 44/582 (8%)
Strand=Plus/Plus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
||| | ||||| | || |||| ||||| || || |||||||||||||| || || |
Sbjct 28182719 TGTATGGGTGTCTCCCAGCATGGAAAAGTGGAGATAATTGCCAATGATCAGGGAAATCAA 28182778
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAA--------------ACTG---AACATTTAG 550127
|| |||||| |||||| ||||||| || |||| |||| |
Sbjct 28182779 ACCACTCCAAGTTATGTCGCTTTCACTAAAGATTGATCAGAGATACTGCAAAACAACTCA 28182838
Query 550128 TTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTA 550187
| | ||||| |||||| |||||| | | || || ||||| || ||||||||| |
Sbjct 28182839 TCAGAGATGCTGCAAAAAATCAAGTGGCAGTGAACCCCACCAACACAGCTTTTGATGCCA 28182898
Query 550188 AACGTTTAATTGGAAGAAGTTTTAATGATT---CGACTGTTCAGGCAGATATGAAGCATT 550244
||| | | |||||| | || | | ||||| | | ||| ||| | | | |||||||||
Sbjct 28182899 AACATCTGATTGGACGTAGATATGATGATGATGCTATTGTCCAGTCTGGTGTGAAGCATT 28182958
Query 550245 GGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGAT 550304
|||| || | || |||| | | || | || ||| | ||| | || ||
Sbjct 28182959 GGCCCTTTATGGTGGTGAATGATGCAGGCAGGCCC-------AAGGT--TCAAGTAGAAT 28183009
Query 550305 -CTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACA 550362
| | | | | | ||| ||||| | | || |||| || | | || |||| |
Sbjct 28183010 ACAGAGAGAAAGAGTTTGTCCAGAGAAGGTGTCTTCTACAGTGCTGACAAAGGTGAAGGA 28183069
Query 550363 AACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCAT 550421
||| || || | | |||| |||| ||||| |||| || | |||| ||||| |
Sbjct 28183070 AACTGCAGACGCGTATCTTGGG-AAGACTGTTACCAATGCTGTGGTTACTGGGCCAGCTT 28183128
Query 550422 ATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATG 550481
| ||||||||||| || ||||| | || |||||||||||| |||||||| |||||||
Sbjct 28183129 ACTTTAATGACTCTCAGCGTCAGGA-ACCAAAGATGCTGGAACCATTGCTGGTCTTAATG 28183187
Query 550482 TTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATA 550541
| ||| | ||||||||||| ||||| |||| ||||| | || ||| |
Sbjct 28183188 TACTTGGAATTATCAATGA----------GCTGCTATTGCTTATGGCTTAGACAAAAAGG 28183237
Query 550542 ATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGTA 550583
|| ||| |||||||| || ||||||| |||||||
Sbjct 28183238 TTGGAGTTGAAAGAAATGTACTGATTTTTGATTTAGGAGGTA 28183279
>seq3134
Length=59225736
Score = 118 bits (130), Expect = 9e-21
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 550024 TTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAG 550083
|||||| ||||| | || | | ||||| || || || |||||||||| || || |
Sbjct 50879564 TTGTGTGGGTGTCTTCCAGCACTGAAAAGTGGAGATAAT--CCAATGATCAGGGAAATTG 50879621
Query 550084 AACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| |||| |||| | ||||| | | ||| |||| | |||| ||||| |||||
Sbjct 50879622 AACTATTCCAAGTTATACTGCTTTCGCCAACACTAAACAACTGATTGGAGATGCTGCAAA 50879681
Query 550144 ATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG 550203
| |||||| || || || ||||| || |||| |||| || | | | |||||| |
Sbjct 50879682 AAATCAAGTGACAACGAACCCAACCAACACAGTTTTCAATGCCAAGCATCTTATTGGATG 50879741
Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252
|| ||| ||||| | ||||||| | ||||||||||||||||| |||
Sbjct 50879742 TAGCTTTTATGATGCTGTTGTTCAGTCTGATATGAAGCATTGGCCCTTC 50879790
>seq3063
Length=7952490
Score = 105 bits (116), Expect = 5e-17
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|||||||| || || ||| ||||| ||| |||||||||| | ||| | | |||||
Sbjct 5877711 ACAAGATGGAGAGTGGACTCCCTTTG--AATGTTGTAATCAGACAAAGTGCATCCATCTT 5877654
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || |||| || || |||||||||||||||||||||||||| |||||||
Sbjct 5877653 CCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTT 5877594
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||||| || || || | | | | | | ||| || | ||
Sbjct 5877593 GGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCC 5877534
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || ||||| ||||| |||||||| |||||
Sbjct 5877533 TCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503
>seq3082
Length=10725151
Score = 102 bits (112), Expect = 7e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312
||| |||||||| || || || || ||| ||||| || ||||| |||| |||||
Sbjct 1251686 CCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1251627
Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372
| |||||| || || || || ||||| || || || ||||| ||||||||||| ||
Sbjct 1251626 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCC 1251567
Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431
||||||||| || || || || || |||||| || ||| || | | || ||| |
Sbjct 1251566 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTG-GGCTCCACTTCCA 1251508
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | || || ||||| || || || ||||| || |||||
Sbjct 1251507 GGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 95.1 bits (104), Expect = 1e-13
Identities = 158/224 (71%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| || || || || || || || || ||| | | ||| || ||||| |||| ||||
Sbjct 1251457 CTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGAG 1251400
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || || || || ||||| ||||| || ||||| ||||||||||| |
Sbjct 1251399 TGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGC 1251340
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430
|||||||||| || || || || || |||||| || || || | | || ||
Sbjct 1251339 CTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTG-GGCTCCACCTCC 1251281
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||| | || || ||||| ||||| || ||||| || |||||
Sbjct 1251280 AGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
>seq3143
Length=88675666
Score = 100 bits (110), Expect = 2e-15
Identities = 93/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||||||||| ||||| ||||||| || | ||| || || |||||||||| | |||
Sbjct 45737991 ACTGTACCAGCTTATTT-AATGACTTTCAGCATCAGGCAACCAAAGATGCTGAAACCATT 45737933
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
||||| |||| ||| || | |||||||||||||| || |||||||| |||| |||
Sbjct 45737932 GCTGGTCTTATTGTACTCAGAATTATCAATGAACCAACAGCTGCTGCTATTGCTTAT 45737876
Score = 89.7 bits (98), Expect = 4e-12
Identities = 184/266 (69%), Gaps = 11/266 (4%)
Strand=Plus/Minus
Query 552120 ATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT---TAAGTTCT 552176
||||| || || ||||| ||||| || || || || || | ||| | |||| ||
Sbjct 45737506 ATTGTCCTGGTGGGTGGTTCTACCAGTATCCCCAAGATCCA-GAAGCTTCTATAAGA-CT 45737449
Query 552177 TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGT 552236
| ||||| ||| ||| |||| ||| | || | || | ||||||||||||| ||||||
Sbjct 45737448 T-TTTCA-TGGAAAAGAATTGAATAAGAGGATCAACCTTGATGAGGCTGTTGATTATGGT 45737391
Query 552237 GCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTA--CAAAATATTG 552294
|| || |||| ||| | | ||| |||| ||||| | |||||| ||| || |
Sbjct 45737390 GCAGCTGTTCAGGCAACCAATCTATCTG--CAAACAAGTCTGAAACTATTCAAGATTTGC 45737333
Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354
| || | ||||| |||||||| ||| ||||| | |||| | ||| || | ||||||
Sbjct 45737332 TGCTCTTGGATGTCACTCCTCTTTCTGTTGGTATTGAAATTGCTGGTGGAGTCATGACTG 45737273
Query 552355 ATCTTATCGATAGAAATACTACTATT 552380
|| ||| | | |||||||| |||
Sbjct 45737272 TCCTCATCAAGGGCAATACTACCATT 45737247
>seq3105
Length=21505965
Score = 98.7 bits (108), Expect = 8e-15
Identities = 99/127 (78%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
||||||||||| || ||| |||| ||| |||||||||| | ||| | | |||||
Sbjct 7417354 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAATCAGACAAAGTACGTCCATCTT 7417411
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| |||||| | | ||||| || || |||||||||||||||||||||||||| ||||| |
Sbjct 7417412 CCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 7417471
Query 563384 GAATTTT 563390
| || ||
Sbjct 7417472 GGATCTT 7417478
>seq2997
Length=2481227
Score = 93.3 bits (102), Expect = 3e-13
Identities = 99/127 (78%), Gaps = 3/127 (2%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG-AATCTT 563323
||||||||||| || | | |||| | ||| |||||| ||| | ||| | | ||||||
Sbjct 411694 ACAAGATGAAGAGTGAACTCCTTTTG-AATGTTGTAACCAGACAAAGTACATCCAATCTT 411636
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || ||||| || || | |||||||||||||||||||||||| ||||| |
Sbjct 411635 CCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 411576
Query 563384 GAATTTT 563390
| || ||
Sbjct 411575 GGATCTT 411569
>seq3116
Length=27942054
Score = 91.5 bits (100), Expect = 1e-12
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | |||||||| || || |||||||| | ||| | ||||| ||
Sbjct 8942874 GTTACTCATGCAGTCGTTACTGTACCTGCCTACTTTAATGATGCTCAAAGGCAAGCAACC 8942933
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| ||||||||||| |||||| | | || |||||||| ||
Sbjct 8942934 AAAGATGCTGGAACAATTGCTGGACTGAATGTTATGAGAATCATCAATGAGCC 8942986
>seq3061
Length=7642621
Score = 86.0 bits (94), Expect = 5e-11
Identities = 96/128 (75%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
|| ||||||||||| || | || || ||| |||||||||| | ||| | | ||||
Sbjct 2174629 AGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCT 2174570
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
|| |||| || ||||| || || ||||| |||||||||||||||||||| |||||
Sbjct 2174569 TCCAGTTA----CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCC 2174514
Query 563383 TGAATTTT 563390
|| || ||
Sbjct 2174513 TGGATCTT 2174506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029129731100560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |